diff --git a/src/analysis/ClassicalMultiDimensionalScaling.cpp b/src/analysis/ClassicalMultiDimensionalScaling.cpp
index 13110527c8b4d694f218d4a1673f6995b240915e..3a3e412578af5578b3d74406e488eaa45e805448 100644
--- a/src/analysis/ClassicalMultiDimensionalScaling.cpp
+++ b/src/analysis/ClassicalMultiDimensionalScaling.cpp
@@ -59,7 +59,6 @@ The RMSD distance between atoms 1-256 have moved is used to measure the distance
 CLASSICAL_MDS ...
   ATOMS=1-256
   METRIC=OPTIMAL-FAST
-  USE_ALL_DATA
   NLOW_DIM=2
   OUTPUT_FILE=rmsd-embed
 ... CLASSICAL_MDS
diff --git a/src/analysis/PCA.cpp b/src/analysis/PCA.cpp
index ec9bde7522dfa5accfa698905034596101a49964..c0dfda76cdb8e1cd94819c81475c505541d967c3 100644
--- a/src/analysis/PCA.cpp
+++ b/src/analysis/PCA.cpp
@@ -64,7 +64,7 @@ The first two principal components will be output to a file called pca-comp.pdb.
 will be performed at the end of the simulation.
 
 \plumedfile
-PCA METRIC=OPTIMAL ATOMS=1-22 STRIDE=1 USE_ALL_DATA NLOW_DIM=2 OFILE=pca-comp.pdb
+PCA METRIC=OPTIMAL ATOMS=1-22 STRIDE=1 NLOW_DIM=2 OFILE=pca-comp.pdb
 \endplumedfile
 
 The following input instructs PLUMED to perform a principal component analysis in which the covariance matrix is calculated from chnages in the six distances
diff --git a/src/gridtools/DumpGrid.cpp b/src/gridtools/DumpGrid.cpp
index 69763fb59f981d16d41b62d86e53af088b2d6378..60924878cf271f96b1a85a97b2198bec07977ca5 100644
--- a/src/gridtools/DumpGrid.cpp
+++ b/src/gridtools/DumpGrid.cpp
@@ -89,7 +89,6 @@ TORSION ATOMS=1,2,3,4 LABEL=r1
 TORSION ATOMS=2,3,4,5 LABEL=r2
 HISTOGRAM ...
   ARG=r1,r2
-  USE_ALL_DATA
   KERNEL=DISCRETE
   GRID_MIN=-3.14,-3.14
   GRID_MAX=3.14,3.14