From 7e5e9cb71c7070eb2cde61b872211d98a63252b1 Mon Sep 17 00:00:00 2001 From: Giovanni Bussi <giovanni.bussi@gmail.com> Date: Fri, 20 Jul 2012 10:47:57 +0200 Subject: [PATCH] PLUMED -> plumed as suggested by Gareth --- src/Action.cpp | 10 +++++----- src/Action.h | 10 +++++----- src/ActionAtomistic.cpp | 10 +++++----- src/ActionAtomistic.h | 10 +++++----- src/ActionPilot.cpp | 10 +++++----- src/ActionPilot.h | 10 +++++----- src/ActionRegister.cpp | 10 +++++----- src/ActionRegister.h | 10 +++++----- src/ActionSet.cpp | 10 +++++----- src/ActionSet.h | 10 +++++----- src/ActionSetup.cpp | 10 +++++----- src/ActionSetup.h | 10 +++++----- src/ActionWithArguments.cpp | 10 +++++----- src/ActionWithArguments.h | 10 +++++----- src/ActionWithDistribution.cpp | 10 +++++----- src/ActionWithDistribution.h | 10 +++++----- src/ActionWithValue.cpp | 10 +++++----- src/ActionWithValue.h | 10 +++++----- src/ActionWithVirtualAtom.cpp | 10 +++++----- src/ActionWithVirtualAtom.h | 10 +++++----- src/Angle.cpp | 10 +++++----- src/Angle.h | 10 +++++----- src/AtomNumber.h | 10 +++++----- src/Atoms.cpp | 10 +++++----- src/Atoms.h | 10 +++++----- src/Bias.cpp | 10 +++++----- src/Bias.h | 10 +++++----- src/BiasExternal.cpp | 10 +++++----- src/BiasFieldMetadynamics.cpp | 10 +++++----- src/BiasLWalls.cpp | 10 +++++----- src/BiasMetaD.cpp | 10 +++++----- src/BiasMovingRestraint.cpp | 10 +++++----- src/BiasRatchet.cpp | 10 +++++----- src/BiasRestraint.cpp | 10 +++++----- src/BiasUWalls.cpp | 10 +++++----- src/CLTool.h | 10 +++++----- src/CLToolDriver.cpp | 10 +++++----- src/CLToolInfo.cpp | 10 +++++----- src/CLToolMain.cpp | 10 +++++----- src/CLToolMain.h | 10 +++++----- src/CLToolManual.cpp | 10 +++++----- src/CLToolRegister.cpp | 10 +++++----- src/CLToolRegister.h | 10 +++++----- src/CLToolSimpleMD.cpp | 10 +++++----- src/Citations.cpp | 10 +++++----- src/Citations.h | 10 +++++----- src/Colvar.cpp | 10 +++++----- src/Colvar.h | 10 +++++----- src/ColvarAlphaRMSD.cpp | 10 +++++----- src/ColvarAngle.cpp | 10 +++++----- src/ColvarAntibetaRMSD.cpp | 10 +++++----- src/ColvarContactMap.cpp | 10 +++++----- src/ColvarCoordination.cpp | 10 +++++----- src/ColvarDRMSD.cpp | 10 +++++----- src/ColvarDipole.cpp | 10 +++++----- src/ColvarDistance.cpp | 10 +++++----- src/ColvarEnergy.cpp | 10 +++++----- src/ColvarParabetaRMSD.cpp | 10 +++++----- src/ColvarRGYR.cpp | 10 +++++----- src/ColvarRMSD.cpp | 10 +++++----- src/ColvarTemplate.cpp | 10 +++++----- src/ColvarTorsion.cpp | 10 +++++----- src/ColvarVolume.cpp | 10 +++++----- src/CubicInterpolation.cpp | 10 +++++----- src/CubicInterpolation.h | 10 +++++----- src/DLLoader.cpp | 10 +++++----- src/DLLoader.h | 10 +++++----- src/DRMSD.cpp | 10 +++++----- src/DRMSD.h | 10 +++++----- src/DistributionCVdens.cpp | 10 +++++----- src/DistributionFunctions.cpp | 10 +++++----- src/DistributionFunctions.h | 10 +++++----- src/DistributionGradient.cpp | 10 +++++----- src/DistributionLessThan.cpp | 10 +++++----- src/DistributionMean.cpp | 10 +++++----- src/DistributionMin.cpp | 10 +++++----- src/DistributionMoment.cpp | 10 +++++----- src/DistributionMoreThan.cpp | 10 +++++----- src/DistributionSum.cpp | 10 +++++----- src/DistributionWithin.cpp | 10 +++++----- src/DynamicList.h | 10 +++++----- src/ExchangePatterns.cpp | 10 +++++----- src/ExchangePatterns.h | 10 +++++----- src/Field.cpp | 10 +++++----- src/Field.h | 10 +++++----- src/FieldBias.cpp | 10 +++++----- src/FieldBias.h | 10 +++++----- src/FlexibleBin.cpp | 10 +++++----- src/FlexibleBin.h | 10 +++++----- src/Function.cpp | 10 +++++----- src/Function.h | 10 +++++----- src/FunctionCombine.cpp | 10 +++++----- src/FunctionMatheval.cpp | 10 +++++----- src/FunctionPiecewise.cpp | 10 +++++----- src/FunctionSort.cpp | 10 +++++----- src/FunctionTarget.cpp | 10 +++++----- src/GREX.cpp | 10 +++++----- src/GREX.h | 10 +++++----- src/GenericCOM.cpp | 10 +++++----- src/GenericDebug.cpp | 10 +++++----- src/GenericDumpAtoms.cpp | 10 +++++----- src/GenericDumpDerivatives.cpp | 10 +++++----- src/GenericDumpField.cpp | 10 +++++----- src/GenericDumpForces.cpp | 10 +++++----- src/GenericDumpProjections.cpp | 10 +++++----- src/GenericFlush.cpp | 10 +++++----- src/GenericGhostAtom.cpp | 10 +++++----- src/GenericGroup.cpp | 10 +++++----- src/GenericPrint.cpp | 10 +++++----- src/GenericWholeMolecules.cpp | 10 +++++----- src/Grid.cpp | 10 +++++----- src/Grid.h | 10 +++++----- src/HistogramBead.cpp | 10 +++++----- src/HistogramBead.h | 10 +++++----- src/Kearsley.cpp | 10 +++++----- src/Kearsley.h | 10 +++++----- src/Keywords.cpp | 10 +++++----- src/Keywords.h | 10 +++++----- src/Log.cpp | 10 +++++----- src/Log.h | 10 +++++----- src/MDAtoms.cpp | 10 +++++----- src/MDAtoms.h | 10 +++++----- src/Matrix.h | 10 +++++----- src/MatrixSquareBracketsAccess.h | 10 +++++----- src/MultiColvar.cpp | 10 +++++----- src/MultiColvar.h | 10 +++++----- src/MultiColvarCoordination.cpp | 10 +++++----- src/MultiColvarDensity.cpp | 10 +++++----- src/MultiColvarDistance.cpp | 10 +++++----- src/MultiColvarSecondaryStructureRMSD.cpp | 10 +++++----- src/MultiColvarSecondaryStructureRMSD.h | 10 +++++----- src/NeighborList.cpp | 10 +++++----- src/NeighborList.h | 10 +++++----- src/OptimalAlignment.cpp | 10 +++++----- src/OptimalAlignment.h | 10 +++++----- src/PDB.cpp | 10 +++++----- src/PDB.h | 10 +++++----- src/Pbc.cpp | 10 +++++----- src/Pbc.h | 10 +++++----- src/Plumed.c | 10 +++++----- src/Plumed.h | 10 +++++----- src/PlumedCommunicator.cpp | 10 +++++----- src/PlumedCommunicator.h | 10 +++++----- src/PlumedConfig.h.in | 10 +++++----- src/PlumedException.cpp | 10 +++++----- src/PlumedException.h | 10 +++++----- src/PlumedMain.cpp | 10 +++++----- src/PlumedMain.h | 10 +++++----- src/PlumedMainInitializer.cpp | 10 +++++----- src/PlumedStatic.cpp | 10 +++++----- src/RMSD.cpp | 10 +++++----- src/RMSD.h | 10 +++++----- src/Random.cpp | 10 +++++----- src/Random.h | 10 +++++----- src/SetupMolInfo.cpp | 10 +++++----- src/SetupMolInfo.h | 10 +++++----- src/SetupUnits.cpp | 10 +++++----- src/Stopwatch.cpp | 10 +++++----- src/Stopwatch.h | 10 +++++----- src/SwitchingFunction.cpp | 10 +++++----- src/SwitchingFunction.h | 10 +++++----- src/TargetDist.cpp | 10 +++++----- src/TargetDist.h | 10 +++++----- src/Tensor.cpp | 10 +++++----- src/Tensor.h | 10 +++++----- src/Tools.cpp | 10 +++++----- src/Tools.h | 10 +++++----- src/Torsion.cpp | 10 +++++----- src/Torsion.h | 10 +++++----- src/Units.h | 10 +++++----- src/Value.cpp | 10 +++++----- src/Value.h | 10 +++++----- src/Vector.cpp | 10 +++++----- src/Vector.h | 10 +++++----- src/WithCmd.h | 10 +++++----- src/header.sh | 10 +++++----- src/main.cpp | 10 +++++----- 177 files changed, 885 insertions(+), 885 deletions(-) diff --git a/src/Action.cpp b/src/Action.cpp index c8c38ff93..4bf9874f6 100644 --- a/src/Action.cpp +++ b/src/Action.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Action.h" #include "ActionWithValue.h" diff --git a/src/Action.h b/src/Action.h index c136ff06c..6df3bedeb 100644 --- a/src/Action.h +++ b/src/Action.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Action_h #define __PLUMED_Action_h diff --git a/src/ActionAtomistic.cpp b/src/ActionAtomistic.cpp index 480e25928..b26acdcfd 100644 --- a/src/ActionAtomistic.cpp +++ b/src/ActionAtomistic.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionAtomistic.h" #include "PlumedMain.h" diff --git a/src/ActionAtomistic.h b/src/ActionAtomistic.h index 5cbc01a39..f41ffba38 100644 --- a/src/ActionAtomistic.h +++ b/src/ActionAtomistic.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_ActionAtomistic_h #define __PLUMED_ActionAtomistic_h diff --git a/src/ActionPilot.cpp b/src/ActionPilot.cpp index e00820e5f..7d10b9315 100644 --- a/src/ActionPilot.cpp +++ b/src/ActionPilot.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionPilot.h" diff --git a/src/ActionPilot.h b/src/ActionPilot.h index 5368f10ec..42b337780 100644 --- a/src/ActionPilot.h +++ b/src/ActionPilot.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_ActionPilot_h #define __PLUMED_ActionPilot_h diff --git a/src/ActionRegister.cpp b/src/ActionRegister.cpp index 2aba7233d..8a89ec65e 100644 --- a/src/ActionRegister.cpp +++ b/src/ActionRegister.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionRegister.h" #include "Tools.h" diff --git a/src/ActionRegister.h b/src/ActionRegister.h index f8b30dc4a..66fc3d95a 100644 --- a/src/ActionRegister.h +++ b/src/ActionRegister.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_ActionRegister_h #define __PLUMED_ActionRegister_h diff --git a/src/ActionSet.cpp b/src/ActionSet.cpp index bcc1d8e2e..2d4e7f034 100644 --- a/src/ActionSet.cpp +++ b/src/ActionSet.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionSet.h" diff --git a/src/ActionSet.h b/src/ActionSet.h index 8a500977f..80a53b4e1 100644 --- a/src/ActionSet.h +++ b/src/ActionSet.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_ActionSet_h #define __PLUMED_ActionSet_h diff --git a/src/ActionSetup.cpp b/src/ActionSetup.cpp index d77b5099a..0e950f059 100644 --- a/src/ActionSetup.cpp +++ b/src/ActionSetup.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionSetup.h" #include "PlumedMain.h" diff --git a/src/ActionSetup.h b/src/ActionSetup.h index c1429abc0..565c90539 100644 --- a/src/ActionSetup.h +++ b/src/ActionSetup.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_ActionSetup_h #define __PLUMED_ActionSetup_h diff --git a/src/ActionWithArguments.cpp b/src/ActionWithArguments.cpp index c4dc772ce..017ddfa0f 100644 --- a/src/ActionWithArguments.cpp +++ b/src/ActionWithArguments.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionWithArguments.h" #include "ActionWithValue.h" diff --git a/src/ActionWithArguments.h b/src/ActionWithArguments.h index c6a033498..85d9e0b78 100644 --- a/src/ActionWithArguments.h +++ b/src/ActionWithArguments.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_ActionWithArguments_h #define __PLUMED_ActionWithArguments_h diff --git a/src/ActionWithDistribution.cpp b/src/ActionWithDistribution.cpp index 0dc081c9a..d6fa72342 100644 --- a/src/ActionWithDistribution.cpp +++ b/src/ActionWithDistribution.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionWithDistribution.h" #include "MultiColvar.h" diff --git a/src/ActionWithDistribution.h b/src/ActionWithDistribution.h index 6b7efb84e..7b37e102b 100644 --- a/src/ActionWithDistribution.h +++ b/src/ActionWithDistribution.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_ActionWithDistribution_h #define __PLUMED_ActionWithDistribution_h diff --git a/src/ActionWithValue.cpp b/src/ActionWithValue.cpp index 5ace7f05e..1cfc26ff7 100644 --- a/src/ActionWithValue.cpp +++ b/src/ActionWithValue.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionWithValue.h" #include "PlumedException.h" diff --git a/src/ActionWithValue.h b/src/ActionWithValue.h index 50e095cdc..74e04fe5d 100644 --- a/src/ActionWithValue.h +++ b/src/ActionWithValue.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_ActionWithValue_h #define __PLUMED_ActionWithValue_h diff --git a/src/ActionWithVirtualAtom.cpp b/src/ActionWithVirtualAtom.cpp index 654627960..f5c268849 100644 --- a/src/ActionWithVirtualAtom.cpp +++ b/src/ActionWithVirtualAtom.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionWithVirtualAtom.h" #include "Atoms.h" diff --git a/src/ActionWithVirtualAtom.h b/src/ActionWithVirtualAtom.h index 2c9c05884..c3913867f 100644 --- a/src/ActionWithVirtualAtom.h +++ b/src/ActionWithVirtualAtom.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_ActionWithVirtualAtom_h #define __PLUMED_ActionWithVirtualAtom_h diff --git a/src/Angle.cpp b/src/Angle.cpp index 858aaab6e..64900ec43 100644 --- a/src/Angle.cpp +++ b/src/Angle.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Angle.h" #include "Tools.h" diff --git a/src/Angle.h b/src/Angle.h index 19e4a4d8d..9f0784dbd 100644 --- a/src/Angle.h +++ b/src/Angle.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Angle_h #define __PLUMED_Angle_h diff --git a/src/AtomNumber.h b/src/AtomNumber.h index 208bc4c98..fdcac2e70 100644 --- a/src/AtomNumber.h +++ b/src/AtomNumber.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_AtomNumber_h #define __PLUMED_AtomNumber_h diff --git a/src/Atoms.cpp b/src/Atoms.cpp index 201cbff29..de8e6ef18 100644 --- a/src/Atoms.cpp +++ b/src/Atoms.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Atoms.h" #include "ActionAtomistic.h" diff --git a/src/Atoms.h b/src/Atoms.h index 3c122eee3..b3e701b6b 100644 --- a/src/Atoms.h +++ b/src/Atoms.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Atoms_h #define __PLUMED_Atoms_h diff --git a/src/Bias.cpp b/src/Bias.cpp index b902aab3b..aeca8797c 100644 --- a/src/Bias.cpp +++ b/src/Bias.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Bias.h" #include "Colvar.h" diff --git a/src/Bias.h b/src/Bias.h index a07cda28a..11b78485d 100644 --- a/src/Bias.h +++ b/src/Bias.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Bias_h #define __PLUMED_Bias_h diff --git a/src/BiasExternal.cpp b/src/BiasExternal.cpp index 22fb991d1..61ff84a97 100644 --- a/src/BiasExternal.cpp +++ b/src/BiasExternal.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Bias.h" #include "ActionRegister.h" diff --git a/src/BiasFieldMetadynamics.cpp b/src/BiasFieldMetadynamics.cpp index 98748b2de..b1f0c44ed 100644 --- a/src/BiasFieldMetadynamics.cpp +++ b/src/BiasFieldMetadynamics.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionPilot.h" #include "ActionRegister.h" diff --git a/src/BiasLWalls.cpp b/src/BiasLWalls.cpp index de434325c..5b9566fde 100644 --- a/src/BiasLWalls.cpp +++ b/src/BiasLWalls.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Bias.h" #include "ActionRegister.h" diff --git a/src/BiasMetaD.cpp b/src/BiasMetaD.cpp index 94f1753b8..269f76a4b 100644 --- a/src/BiasMetaD.cpp +++ b/src/BiasMetaD.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Bias.h" #include "ActionRegister.h" diff --git a/src/BiasMovingRestraint.cpp b/src/BiasMovingRestraint.cpp index e4f19a8ce..c3a66b09b 100644 --- a/src/BiasMovingRestraint.cpp +++ b/src/BiasMovingRestraint.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Bias.h" #include "ActionRegister.h" diff --git a/src/BiasRatchet.cpp b/src/BiasRatchet.cpp index ec592de0a..72e3ca967 100644 --- a/src/BiasRatchet.cpp +++ b/src/BiasRatchet.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Bias.h" #include "Random.h" diff --git a/src/BiasRestraint.cpp b/src/BiasRestraint.cpp index 40f8f81d6..011feab52 100644 --- a/src/BiasRestraint.cpp +++ b/src/BiasRestraint.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Bias.h" #include "ActionRegister.h" diff --git a/src/BiasUWalls.cpp b/src/BiasUWalls.cpp index 39d43ffd1..ee6f3880e 100644 --- a/src/BiasUWalls.cpp +++ b/src/BiasUWalls.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Bias.h" #include "ActionRegister.h" diff --git a/src/CLTool.h b/src/CLTool.h index 69ea9c11e..1dc435baa 100644 --- a/src/CLTool.h +++ b/src/CLTool.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_CLTool_h diff --git a/src/CLToolDriver.cpp b/src/CLToolDriver.cpp index 284c663ee..73b155e44 100644 --- a/src/CLToolDriver.cpp +++ b/src/CLToolDriver.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "CLTool.h" #include "CLToolRegister.h" diff --git a/src/CLToolInfo.cpp b/src/CLToolInfo.cpp index a955bf94a..44c407979 100644 --- a/src/CLToolInfo.cpp +++ b/src/CLToolInfo.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "CLTool.h" #include "CLToolRegister.h" diff --git a/src/CLToolMain.cpp b/src/CLToolMain.cpp index e45ef0758..ce4dd6aed 100644 --- a/src/CLToolMain.cpp +++ b/src/CLToolMain.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "PlumedConfig.h" #include "PlumedException.h" diff --git a/src/CLToolMain.h b/src/CLToolMain.h index 28bdb18c3..405d735b3 100644 --- a/src/CLToolMain.h +++ b/src/CLToolMain.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_CLToolMain_h diff --git a/src/CLToolManual.cpp b/src/CLToolManual.cpp index cea715a56..0754891bc 100644 --- a/src/CLToolManual.cpp +++ b/src/CLToolManual.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "CLTool.h" #include "CLToolRegister.h" diff --git a/src/CLToolRegister.cpp b/src/CLToolRegister.cpp index a667be507..4d9292b99 100644 --- a/src/CLToolRegister.cpp +++ b/src/CLToolRegister.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "CLToolRegister.h" #include "Tools.h" diff --git a/src/CLToolRegister.h b/src/CLToolRegister.h index 3f2292170..251a1be8c 100644 --- a/src/CLToolRegister.h +++ b/src/CLToolRegister.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_CLToolRegister_h #define __PLUMED_CLToolRegister_h diff --git a/src/CLToolSimpleMD.cpp b/src/CLToolSimpleMD.cpp index 5c21e136a..0a7d9ca49 100644 --- a/src/CLToolSimpleMD.cpp +++ b/src/CLToolSimpleMD.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "CLTool.h" #include "CLToolRegister.h" diff --git a/src/Citations.cpp b/src/Citations.cpp index 7cd488e15..aebf931c9 100644 --- a/src/Citations.cpp +++ b/src/Citations.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Citations.h" #include "PlumedException.h" diff --git a/src/Citations.h b/src/Citations.h index 022521ef9..79fb95a4e 100644 --- a/src/Citations.h +++ b/src/Citations.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Citations_h #define __PLUMED_Citations_h diff --git a/src/Colvar.cpp b/src/Colvar.cpp index b9c53a445..a0e93ecd1 100644 --- a/src/Colvar.cpp +++ b/src/Colvar.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include <vector> diff --git a/src/Colvar.h b/src/Colvar.h index b60a25e28..b4e53a5b2 100644 --- a/src/Colvar.h +++ b/src/Colvar.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Colvar_h #define __PLUMED_Colvar_h diff --git a/src/ColvarAlphaRMSD.cpp b/src/ColvarAlphaRMSD.cpp index 9e05676cf..5db1dda61 100644 --- a/src/ColvarAlphaRMSD.cpp +++ b/src/ColvarAlphaRMSD.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "MultiColvarSecondaryStructureRMSD.h" #include "ActionRegister.h" diff --git a/src/ColvarAngle.cpp b/src/ColvarAngle.cpp index 0001afe35..975040686 100644 --- a/src/ColvarAngle.cpp +++ b/src/ColvarAngle.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include "ActionRegister.h" diff --git a/src/ColvarAntibetaRMSD.cpp b/src/ColvarAntibetaRMSD.cpp index b7764d00a..56d8f8fae 100644 --- a/src/ColvarAntibetaRMSD.cpp +++ b/src/ColvarAntibetaRMSD.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "MultiColvarSecondaryStructureRMSD.h" #include "ActionRegister.h" diff --git a/src/ColvarContactMap.cpp b/src/ColvarContactMap.cpp index e6d96ba61..3c53baa09 100644 --- a/src/ColvarContactMap.cpp +++ b/src/ColvarContactMap.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include "NeighborList.h" diff --git a/src/ColvarCoordination.cpp b/src/ColvarCoordination.cpp index 769b0f314..f11e0405b 100644 --- a/src/ColvarCoordination.cpp +++ b/src/ColvarCoordination.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "SwitchingFunction.h" #include "Colvar.h" diff --git a/src/ColvarDRMSD.cpp b/src/ColvarDRMSD.cpp index 33dd15ab1..5943911b1 100644 --- a/src/ColvarDRMSD.cpp +++ b/src/ColvarDRMSD.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include "PlumedMain.h" diff --git a/src/ColvarDipole.cpp b/src/ColvarDipole.cpp index e301b10c8..46dcba33a 100644 --- a/src/ColvarDipole.cpp +++ b/src/ColvarDipole.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include "ActionRegister.h" diff --git a/src/ColvarDistance.cpp b/src/ColvarDistance.cpp index 7138c6b93..4eb74602c 100644 --- a/src/ColvarDistance.cpp +++ b/src/ColvarDistance.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include "ActionRegister.h" diff --git a/src/ColvarEnergy.cpp b/src/ColvarEnergy.cpp index d2883f24a..848603ebc 100644 --- a/src/ColvarEnergy.cpp +++ b/src/ColvarEnergy.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include "ActionRegister.h" diff --git a/src/ColvarParabetaRMSD.cpp b/src/ColvarParabetaRMSD.cpp index 40a3af508..ea990a1f5 100644 --- a/src/ColvarParabetaRMSD.cpp +++ b/src/ColvarParabetaRMSD.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "MultiColvarSecondaryStructureRMSD.h" #include "ActionRegister.h" diff --git a/src/ColvarRGYR.cpp b/src/ColvarRGYR.cpp index 5624432d6..c50f28c02 100644 --- a/src/ColvarRGYR.cpp +++ b/src/ColvarRGYR.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include "ActionRegister.h" diff --git a/src/ColvarRMSD.cpp b/src/ColvarRMSD.cpp index 3d3859622..e6f929c30 100644 --- a/src/ColvarRMSD.cpp +++ b/src/ColvarRMSD.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include "PlumedMain.h" diff --git a/src/ColvarTemplate.cpp b/src/ColvarTemplate.cpp index b511eae0b..8332342e7 100644 --- a/src/ColvarTemplate.cpp +++ b/src/ColvarTemplate.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include "ActionRegister.h" diff --git a/src/ColvarTorsion.cpp b/src/ColvarTorsion.cpp index ef0035137..049f884b0 100644 --- a/src/ColvarTorsion.cpp +++ b/src/ColvarTorsion.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include "ActionRegister.h" diff --git a/src/ColvarVolume.cpp b/src/ColvarVolume.cpp index 0381838b1..ba5328977 100644 --- a/src/ColvarVolume.cpp +++ b/src/ColvarVolume.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Colvar.h" #include "ActionRegister.h" diff --git a/src/CubicInterpolation.cpp b/src/CubicInterpolation.cpp index 3ec42b313..4bc10e5be 100644 --- a/src/CubicInterpolation.cpp +++ b/src/CubicInterpolation.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "CubicInterpolation.h" diff --git a/src/CubicInterpolation.h b/src/CubicInterpolation.h index efd2238a6..cb17cda29 100644 --- a/src/CubicInterpolation.h +++ b/src/CubicInterpolation.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_CubitInterpolation_h #define __PLUMED_CubitInterpolation_h diff --git a/src/DLLoader.cpp b/src/DLLoader.cpp index 217dcdbff..de8c14791 100644 --- a/src/DLLoader.cpp +++ b/src/DLLoader.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "DLLoader.h" diff --git a/src/DLLoader.h b/src/DLLoader.h index 65cfe2528..37bc02561 100644 --- a/src/DLLoader.h +++ b/src/DLLoader.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_DLLoader_h #define __PLUMED_DLLoader_h diff --git a/src/DRMSD.cpp b/src/DRMSD.cpp index 5410f3269..34e464440 100644 --- a/src/DRMSD.cpp +++ b/src/DRMSD.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "DRMSD.h" #include "PDB.h" diff --git a/src/DRMSD.h b/src/DRMSD.h index 3758ac677..b9ce260d5 100644 --- a/src/DRMSD.h +++ b/src/DRMSD.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_DRMSD_h #define __PLUMED_DRMSD_h diff --git a/src/DistributionCVdens.cpp b/src/DistributionCVdens.cpp index 190cdfad6..cfc6eeffa 100644 --- a/src/DistributionCVdens.cpp +++ b/src/DistributionCVdens.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "DistributionFunctions.h" #include "Value.h" diff --git a/src/DistributionFunctions.cpp b/src/DistributionFunctions.cpp index 660fa0e53..80db7c76f 100644 --- a/src/DistributionFunctions.cpp +++ b/src/DistributionFunctions.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionWithDistribution.h" #include "DistributionFunctions.h" diff --git a/src/DistributionFunctions.h b/src/DistributionFunctions.h index 87b0a011a..0c3fd8fdd 100644 --- a/src/DistributionFunctions.h +++ b/src/DistributionFunctions.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_DistributionFunction_h #define __PLUMED_DistributionFunction_h diff --git a/src/DistributionGradient.cpp b/src/DistributionGradient.cpp index e8da7fc81..052246935 100644 --- a/src/DistributionGradient.cpp +++ b/src/DistributionGradient.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "DistributionFunctions.h" #include "Keywords.h" diff --git a/src/DistributionLessThan.cpp b/src/DistributionLessThan.cpp index 245fcddbf..4835b550f 100644 --- a/src/DistributionLessThan.cpp +++ b/src/DistributionLessThan.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "DistributionFunctions.h" diff --git a/src/DistributionMean.cpp b/src/DistributionMean.cpp index 71cca324e..4666121e9 100644 --- a/src/DistributionMean.cpp +++ b/src/DistributionMean.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "DistributionFunctions.h" diff --git a/src/DistributionMin.cpp b/src/DistributionMin.cpp index ceeed9f41..b086b907c 100644 --- a/src/DistributionMin.cpp +++ b/src/DistributionMin.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "DistributionFunctions.h" #include "Keywords.h" diff --git a/src/DistributionMoment.cpp b/src/DistributionMoment.cpp index ab36eb0cc..34091eccd 100644 --- a/src/DistributionMoment.cpp +++ b/src/DistributionMoment.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "DistributionFunctions.h" diff --git a/src/DistributionMoreThan.cpp b/src/DistributionMoreThan.cpp index 11dc38164..b11d525fd 100644 --- a/src/DistributionMoreThan.cpp +++ b/src/DistributionMoreThan.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "DistributionFunctions.h" diff --git a/src/DistributionSum.cpp b/src/DistributionSum.cpp index 398e79d9a..93e953255 100644 --- a/src/DistributionSum.cpp +++ b/src/DistributionSum.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "DistributionFunctions.h" diff --git a/src/DistributionWithin.cpp b/src/DistributionWithin.cpp index 1ef6f34b7..f25f63143 100644 --- a/src/DistributionWithin.cpp +++ b/src/DistributionWithin.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "DistributionFunctions.h" diff --git a/src/DynamicList.h b/src/DynamicList.h index fd3c1c98d..1fc824047 100644 --- a/src/DynamicList.h +++ b/src/DynamicList.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_DynamicList_h #define __PLUMED_DynamicList_h diff --git a/src/ExchangePatterns.cpp b/src/ExchangePatterns.cpp index 4273bdc4c..bdfc44343 100644 --- a/src/ExchangePatterns.cpp +++ b/src/ExchangePatterns.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ExchangePatterns.h" diff --git a/src/ExchangePatterns.h b/src/ExchangePatterns.h index 348fbd53a..2e846537e 100644 --- a/src/ExchangePatterns.h +++ b/src/ExchangePatterns.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_ExchangePatterns_h #define __PLUMED_ExchangePatterns_h diff --git a/src/Field.cpp b/src/Field.cpp index 12108acf5..1a0aa0f46 100644 --- a/src/Field.cpp +++ b/src/Field.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Field.h" #include "PlumedCommunicator.h" diff --git a/src/Field.h b/src/Field.h index 2e0aba412..c7ba87687 100644 --- a/src/Field.h +++ b/src/Field.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Field_h #define __PLUMED_Field_h diff --git a/src/FieldBias.cpp b/src/FieldBias.cpp index d14b8146e..25d86adbd 100644 --- a/src/FieldBias.cpp +++ b/src/FieldBias.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "FieldBias.h" #include "PlumedMain.h" diff --git a/src/FieldBias.h b/src/FieldBias.h index 05cdb51dc..578e2a482 100644 --- a/src/FieldBias.h +++ b/src/FieldBias.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_FieldBias_h #define __PLUMED_FieldBias_h diff --git a/src/FlexibleBin.cpp b/src/FlexibleBin.cpp index fd14adc2b..44251bfd7 100644 --- a/src/FlexibleBin.cpp +++ b/src/FlexibleBin.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "FlexibleBin.h" #include "ActionWithArguments.h" diff --git a/src/FlexibleBin.h b/src/FlexibleBin.h index b6bc3a725..b80a6ea91 100644 --- a/src/FlexibleBin.h +++ b/src/FlexibleBin.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_FlexibleBin_h #define __PLUMED_FlexibleBin_h diff --git a/src/Function.cpp b/src/Function.cpp index 8aac9fe53..9344e4033 100644 --- a/src/Function.cpp +++ b/src/Function.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Function.h" diff --git a/src/Function.h b/src/Function.h index 53ef90f9b..e60dc9cb1 100644 --- a/src/Function.h +++ b/src/Function.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Function_h #define __PLUMED_Function_h diff --git a/src/FunctionCombine.cpp b/src/FunctionCombine.cpp index f5c97acc4..4e4fb0f31 100644 --- a/src/FunctionCombine.cpp +++ b/src/FunctionCombine.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionRegister.h" #include "Function.h" diff --git a/src/FunctionMatheval.cpp b/src/FunctionMatheval.cpp index 00109e171..588e321eb 100644 --- a/src/FunctionMatheval.cpp +++ b/src/FunctionMatheval.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionRegister.h" #include "Function.h" diff --git a/src/FunctionPiecewise.cpp b/src/FunctionPiecewise.cpp index 19dcf9d60..26ad70a80 100644 --- a/src/FunctionPiecewise.cpp +++ b/src/FunctionPiecewise.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionRegister.h" #include "Function.h" diff --git a/src/FunctionSort.cpp b/src/FunctionSort.cpp index 7dee7cd0b..c726744af 100644 --- a/src/FunctionSort.cpp +++ b/src/FunctionSort.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionRegister.h" #include "Function.h" diff --git a/src/FunctionTarget.cpp b/src/FunctionTarget.cpp index b4cc1821c..9cd53590e 100644 --- a/src/FunctionTarget.cpp +++ b/src/FunctionTarget.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Function.h" #include "PlumedMain.h" diff --git a/src/GREX.cpp b/src/GREX.cpp index 9f0d53a71..ac5c077e8 100644 --- a/src/GREX.cpp +++ b/src/GREX.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "GREX.h" #include "PlumedMain.h" diff --git a/src/GREX.h b/src/GREX.h index 944e755a9..73f304c57 100644 --- a/src/GREX.h +++ b/src/GREX.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Grex_h #define __PLUMED_Grex_h diff --git a/src/GenericCOM.cpp b/src/GenericCOM.cpp index 9a2994d1d..7a05b5a81 100644 --- a/src/GenericCOM.cpp +++ b/src/GenericCOM.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionWithVirtualAtom.h" #include "ActionRegister.h" diff --git a/src/GenericDebug.cpp b/src/GenericDebug.cpp index 1ea2d0d90..8e2f7de99 100644 --- a/src/GenericDebug.cpp +++ b/src/GenericDebug.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionRegister.h" #include "ActionPilot.h" diff --git a/src/GenericDumpAtoms.cpp b/src/GenericDumpAtoms.cpp index 8c68e05ce..6703f66ff 100644 --- a/src/GenericDumpAtoms.cpp +++ b/src/GenericDumpAtoms.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionAtomistic.h" #include "ActionPilot.h" diff --git a/src/GenericDumpDerivatives.cpp b/src/GenericDumpDerivatives.cpp index 5dd833103..9bbb83eba 100644 --- a/src/GenericDumpDerivatives.cpp +++ b/src/GenericDumpDerivatives.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionPilot.h" #include "ActionWithArguments.h" diff --git a/src/GenericDumpField.cpp b/src/GenericDumpField.cpp index 24275ab0b..422bad8bf 100644 --- a/src/GenericDumpField.cpp +++ b/src/GenericDumpField.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionPilot.h" #include "ActionRegister.h" diff --git a/src/GenericDumpForces.cpp b/src/GenericDumpForces.cpp index d5c3ac4c9..ef54b5f78 100644 --- a/src/GenericDumpForces.cpp +++ b/src/GenericDumpForces.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionPilot.h" #include "ActionWithArguments.h" diff --git a/src/GenericDumpProjections.cpp b/src/GenericDumpProjections.cpp index f4bfeab89..e3012b595 100644 --- a/src/GenericDumpProjections.cpp +++ b/src/GenericDumpProjections.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionPilot.h" #include "ActionWithArguments.h" diff --git a/src/GenericFlush.cpp b/src/GenericFlush.cpp index 4986d7d1c..eb2244e8a 100644 --- a/src/GenericFlush.cpp +++ b/src/GenericFlush.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionRegister.h" #include "ActionPilot.h" diff --git a/src/GenericGhostAtom.cpp b/src/GenericGhostAtom.cpp index eb623fa21..70d7007a2 100644 --- a/src/GenericGhostAtom.cpp +++ b/src/GenericGhostAtom.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionWithVirtualAtom.h" #include "ActionRegister.h" diff --git a/src/GenericGroup.cpp b/src/GenericGroup.cpp index cf58872fa..3a74132cc 100644 --- a/src/GenericGroup.cpp +++ b/src/GenericGroup.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_GenericGroup_h #define __PLUMED_GenericGroup_h diff --git a/src/GenericPrint.cpp b/src/GenericPrint.cpp index 3a2a9f70b..aabee4889 100644 --- a/src/GenericPrint.cpp +++ b/src/GenericPrint.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionPilot.h" #include "ActionWithArguments.h" diff --git a/src/GenericWholeMolecules.cpp b/src/GenericWholeMolecules.cpp index 844acece3..2b5ba7a91 100644 --- a/src/GenericWholeMolecules.cpp +++ b/src/GenericWholeMolecules.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionAtomistic.h" #include "ActionPilot.h" diff --git a/src/Grid.cpp b/src/Grid.cpp index 5ac2b3638..b842a473b 100644 --- a/src/Grid.cpp +++ b/src/Grid.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include <vector> #include <cmath> diff --git a/src/Grid.h b/src/Grid.h index 6da0bd87c..8bde5e9fa 100644 --- a/src/Grid.h +++ b/src/Grid.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Grid_h #define __PLUMED_Grid_h diff --git a/src/HistogramBead.cpp b/src/HistogramBead.cpp index 7b8d647da..02359bb15 100644 --- a/src/HistogramBead.cpp +++ b/src/HistogramBead.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "HistogramBead.h" #include <vector> diff --git a/src/HistogramBead.h b/src/HistogramBead.h index a9d251066..823d08de4 100644 --- a/src/HistogramBead.h +++ b/src/HistogramBead.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_HistogramBead_h #define __PLUMED_HistogramBead_h diff --git a/src/Kearsley.cpp b/src/Kearsley.cpp index 20639df36..b7f8a77ad 100644 --- a/src/Kearsley.cpp +++ b/src/Kearsley.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Kearsley.h" #include <cmath> diff --git a/src/Kearsley.h b/src/Kearsley.h index c246727f6..68e9f1d06 100644 --- a/src/Kearsley.h +++ b/src/Kearsley.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Kearsley_h #define __PLUMED_Kearsley_h diff --git a/src/Keywords.cpp b/src/Keywords.cpp index 7338c8764..5724e58f6 100644 --- a/src/Keywords.cpp +++ b/src/Keywords.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Keywords.h" #include "DistributionFunctions.h" diff --git a/src/Keywords.h b/src/Keywords.h index fbf8cda6d..cdb387a75 100644 --- a/src/Keywords.h +++ b/src/Keywords.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Keywords_h #define __PLUMED_Keywords_h diff --git a/src/Log.cpp b/src/Log.cpp index 1f77a569d..40354c5eb 100644 --- a/src/Log.cpp +++ b/src/Log.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include <cstdarg> #include <cstring> diff --git a/src/Log.h b/src/Log.h index dabb89aff..e7b7cbf52 100644 --- a/src/Log.h +++ b/src/Log.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Log_h #define __PLUMED_Log_h diff --git a/src/MDAtoms.cpp b/src/MDAtoms.cpp index c09a44f78..7c80e50c3 100644 --- a/src/MDAtoms.cpp +++ b/src/MDAtoms.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include <algorithm> #include <string> diff --git a/src/MDAtoms.h b/src/MDAtoms.h index f8531b147..85f376c3a 100644 --- a/src/MDAtoms.h +++ b/src/MDAtoms.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_MDAtoms_h #define __PLUMED_MDAtoms_h diff --git a/src/Matrix.h b/src/Matrix.h index 8ebc5bc4f..d40e9f35d 100644 --- a/src/Matrix.h +++ b/src/Matrix.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Matrix_h #define __PLUMED_Matrix_h diff --git a/src/MatrixSquareBracketsAccess.h b/src/MatrixSquareBracketsAccess.h index 1d6d96e35..c6edda8cb 100644 --- a/src/MatrixSquareBracketsAccess.h +++ b/src/MatrixSquareBracketsAccess.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_MatrixSquareBracketsAccess_h #define __PLUMED_MatrixSquareBracketsAccess_h diff --git a/src/MultiColvar.cpp b/src/MultiColvar.cpp index 50239b4f7..86dd17528 100644 --- a/src/MultiColvar.cpp +++ b/src/MultiColvar.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "MultiColvar.h" #include "PlumedMain.h" diff --git a/src/MultiColvar.h b/src/MultiColvar.h index 68017e68b..4e9415e91 100644 --- a/src/MultiColvar.h +++ b/src/MultiColvar.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_MultiColvar_h #define __PLUMED_MultiColvar_h diff --git a/src/MultiColvarCoordination.cpp b/src/MultiColvarCoordination.cpp index 23b8ce2b1..9e2fc5e79 100644 --- a/src/MultiColvarCoordination.cpp +++ b/src/MultiColvarCoordination.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "MultiColvar.h" #include "NeighborList.h" diff --git a/src/MultiColvarDensity.cpp b/src/MultiColvarDensity.cpp index 18519aa12..2a58d2597 100644 --- a/src/MultiColvarDensity.cpp +++ b/src/MultiColvarDensity.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "MultiColvar.h" #include "ActionRegister.h" diff --git a/src/MultiColvarDistance.cpp b/src/MultiColvarDistance.cpp index 23fc516ac..46b6e69d6 100644 --- a/src/MultiColvarDistance.cpp +++ b/src/MultiColvarDistance.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "MultiColvar.h" #include "ActionRegister.h" diff --git a/src/MultiColvarSecondaryStructureRMSD.cpp b/src/MultiColvarSecondaryStructureRMSD.cpp index b8d124b09..7791f6ec2 100644 --- a/src/MultiColvarSecondaryStructureRMSD.cpp +++ b/src/MultiColvarSecondaryStructureRMSD.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "MultiColvarSecondaryStructureRMSD.h" #include "PlumedMain.h" diff --git a/src/MultiColvarSecondaryStructureRMSD.h b/src/MultiColvarSecondaryStructureRMSD.h index ed752f539..853920cb9 100644 --- a/src/MultiColvarSecondaryStructureRMSD.h +++ b/src/MultiColvarSecondaryStructureRMSD.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_MultiColvarSecondaryStructureRMSD_h #define __PLUMED_MultiColvarSecondaryStructureRMSD_h diff --git a/src/NeighborList.cpp b/src/NeighborList.cpp index efd7ebf89..89e5fe613 100644 --- a/src/NeighborList.cpp +++ b/src/NeighborList.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include <vector> #include <algorithm> diff --git a/src/NeighborList.h b/src/NeighborList.h index 47bcf274d..c9e457cbd 100644 --- a/src/NeighborList.h +++ b/src/NeighborList.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_NeighborList_h #define __PLUMED_NeighborList_h diff --git a/src/OptimalAlignment.cpp b/src/OptimalAlignment.cpp index 6dba63587..a7074b036 100644 --- a/src/OptimalAlignment.cpp +++ b/src/OptimalAlignment.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "OptimalAlignment.h" #include "Kearsley.h" diff --git a/src/OptimalAlignment.h b/src/OptimalAlignment.h index 37604a0a6..89cfa7e3c 100644 --- a/src/OptimalAlignment.h +++ b/src/OptimalAlignment.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_OptimalAlignment_h #define __PLUMED_OptimalAlignment_h diff --git a/src/PDB.cpp b/src/PDB.cpp index 2af13f989..d8540e6cb 100644 --- a/src/PDB.cpp +++ b/src/PDB.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "PDB.h" #include "Tools.h" diff --git a/src/PDB.h b/src/PDB.h index 8a5cf59fd..9ccd5db6a 100644 --- a/src/PDB.h +++ b/src/PDB.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_PDB_h #define __PLUMED_PDB_h diff --git a/src/Pbc.cpp b/src/Pbc.cpp index 7187d96db..6df3a1dde 100644 --- a/src/Pbc.cpp +++ b/src/Pbc.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Pbc.h" #include "Tools.h" diff --git a/src/Pbc.h b/src/Pbc.h index 218501a39..afce948c4 100644 --- a/src/Pbc.h +++ b/src/Pbc.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Pbc_h #define __PLUMED_Pbc_h diff --git a/src/Plumed.c b/src/Plumed.c index c8344dd17..7186beece 100644 --- a/src/Plumed.c +++ b/src/Plumed.c @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifdef __PLUMED_HAS_DLOPEN #include <dlfcn.h> diff --git a/src/Plumed.h b/src/Plumed.h index ea880351c..ae2711aea 100644 --- a/src/Plumed.h +++ b/src/Plumed.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Plumed_h #define __PLUMED_Plumed_h diff --git a/src/PlumedCommunicator.cpp b/src/PlumedCommunicator.cpp index f5e23af11..857bf054e 100644 --- a/src/PlumedCommunicator.cpp +++ b/src/PlumedCommunicator.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include <cstdlib> #include "PlumedCommunicator.h" diff --git a/src/PlumedCommunicator.h b/src/PlumedCommunicator.h index a0a0da78e..55929c122 100644 --- a/src/PlumedCommunicator.h +++ b/src/PlumedCommunicator.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_PlumedCommunicator_h #define __PLUMED_PlumedCommunicator_h diff --git a/src/PlumedConfig.h.in b/src/PlumedConfig.h.in index 94cb2a8bb..ae2244fb5 100644 --- a/src/PlumedConfig.h.in +++ b/src/PlumedConfig.h.in @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_PlumedConfig_h #define __PLUMED_PlumedConfig_h diff --git a/src/PlumedException.cpp b/src/PlumedException.cpp index 88268a6d1..6f54b092c 100644 --- a/src/PlumedException.cpp +++ b/src/PlumedException.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "PlumedException.h" #include <cstdio> diff --git a/src/PlumedException.h b/src/PlumedException.h index 7a9743d61..f6e4edb8c 100644 --- a/src/PlumedException.h +++ b/src/PlumedException.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_PlumedException_h #define __PLUMED_PlumedException_h diff --git a/src/PlumedMain.cpp b/src/PlumedMain.cpp index 8954fb907..e76656ff9 100644 --- a/src/PlumedMain.cpp +++ b/src/PlumedMain.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "PlumedMain.h" #include "Tools.h" diff --git a/src/PlumedMain.h b/src/PlumedMain.h index 2c731f4ff..e26b26ce8 100644 --- a/src/PlumedMain.h +++ b/src/PlumedMain.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_PlumedMain_h #define __PLUMED_PlumedMain_h diff --git a/src/PlumedMainInitializer.cpp b/src/PlumedMainInitializer.cpp index 706aeabb8..a340f9314 100644 --- a/src/PlumedMainInitializer.cpp +++ b/src/PlumedMainInitializer.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "PlumedMain.h" #include "PlumedException.h" diff --git a/src/PlumedStatic.cpp b/src/PlumedStatic.cpp index ffd6b123a..ab2d626bc 100644 --- a/src/PlumedStatic.cpp +++ b/src/PlumedStatic.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ /* We here compile a version of Plumed.c which is statically bound to the plumed library, diff --git a/src/RMSD.cpp b/src/RMSD.cpp index 27d9d9fc1..e1516e99f 100644 --- a/src/RMSD.cpp +++ b/src/RMSD.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "RMSD.h" #include "PDB.h" diff --git a/src/RMSD.h b/src/RMSD.h index 7719d7a6b..603269dd1 100644 --- a/src/RMSD.h +++ b/src/RMSD.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_RMSD_h #define __PLUMED_RMSD_h diff --git a/src/Random.cpp b/src/Random.cpp index 6444cf476..6944d4777 100644 --- a/src/Random.cpp +++ b/src/Random.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Random.h" #include <cmath> diff --git a/src/Random.h b/src/Random.h index 071356221..7c90c66ec 100644 --- a/src/Random.h +++ b/src/Random.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __RANDOM_H #define __RANDOM_H diff --git a/src/SetupMolInfo.cpp b/src/SetupMolInfo.cpp index 8ffdab74c..a82dc81b7 100644 --- a/src/SetupMolInfo.cpp +++ b/src/SetupMolInfo.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "SetupMolInfo.h" #include "Atoms.h" diff --git a/src/SetupMolInfo.h b/src/SetupMolInfo.h index 57712c1f3..5c79cb93f 100644 --- a/src/SetupMolInfo.h +++ b/src/SetupMolInfo.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_MolInfo_h #define __PLUMED_MolInfo_h diff --git a/src/SetupUnits.cpp b/src/SetupUnits.cpp index c34dc6a77..bc27999ad 100644 --- a/src/SetupUnits.cpp +++ b/src/SetupUnits.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "ActionSetup.h" #include "ActionRegister.h" diff --git a/src/Stopwatch.cpp b/src/Stopwatch.cpp index d34cc4141..2f6815ab6 100644 --- a/src/Stopwatch.cpp +++ b/src/Stopwatch.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Stopwatch.h" diff --git a/src/Stopwatch.h b/src/Stopwatch.h index 797387022..ec9d0032a 100644 --- a/src/Stopwatch.h +++ b/src/Stopwatch.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Stopwatch_h #define __PLUMED_Stopwatch_h diff --git a/src/SwitchingFunction.cpp b/src/SwitchingFunction.cpp index 6d6f493df..5214b9559 100644 --- a/src/SwitchingFunction.cpp +++ b/src/SwitchingFunction.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "SwitchingFunction.h" #include "Tools.h" diff --git a/src/SwitchingFunction.h b/src/SwitchingFunction.h index 5a8dbd085..07ebcb842 100644 --- a/src/SwitchingFunction.h +++ b/src/SwitchingFunction.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_SwitchingFunction_h #define __PLUMED_SwitchingFunction_h diff --git a/src/TargetDist.cpp b/src/TargetDist.cpp index f529f0b12..2c34f71c3 100644 --- a/src/TargetDist.cpp +++ b/src/TargetDist.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "TargetDist.h" #include "PDB.h" diff --git a/src/TargetDist.h b/src/TargetDist.h index 8441b83f0..c926de917 100644 --- a/src/TargetDist.h +++ b/src/TargetDist.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_TargetDist_h #define __PLUMED_TargetDist_h diff --git a/src/Tensor.cpp b/src/Tensor.cpp index 93ae99a1e..0279cee03 100644 --- a/src/Tensor.cpp +++ b/src/Tensor.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Tensor.h" #include "PlumedException.h" diff --git a/src/Tensor.h b/src/Tensor.h index 1f659064b..df784cf53 100644 --- a/src/Tensor.h +++ b/src/Tensor.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Tensor_h #define __PLUMED_Tensor_h diff --git a/src/Tools.cpp b/src/Tools.cpp index 8b27a617c..987462134 100644 --- a/src/Tools.cpp +++ b/src/Tools.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Tools.h" #include "AtomNumber.h" diff --git a/src/Tools.h b/src/Tools.h index 4498c621e..a2c40d27a 100644 --- a/src/Tools.h +++ b/src/Tools.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Tools_h #define __PLUMED_Tools_h diff --git a/src/Torsion.cpp b/src/Torsion.cpp index 7a6de41c7..426deca00 100644 --- a/src/Torsion.cpp +++ b/src/Torsion.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Torsion.h" #include "Tensor.h" diff --git a/src/Torsion.h b/src/Torsion.h index fc63cde61..82bbb97e3 100644 --- a/src/Torsion.h +++ b/src/Torsion.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Torsion_h #define __PLUMED_Torsion_h diff --git a/src/Units.h b/src/Units.h index 44f865b20..db423be6b 100644 --- a/src/Units.h +++ b/src/Units.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Units_h #define __PLUMED_Units_h diff --git a/src/Value.cpp b/src/Value.cpp index cac2e8108..b58760153 100644 --- a/src/Value.cpp +++ b/src/Value.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Value.h" #include "ActionWithValue.h" diff --git a/src/Value.h b/src/Value.h index 0bcb5307f..05bc2a208 100644 --- a/src/Value.h +++ b/src/Value.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Value_h #define __PLUMED_Value_h diff --git a/src/Vector.cpp b/src/Vector.cpp index 312c10609..6b8cee2bc 100644 --- a/src/Vector.cpp +++ b/src/Vector.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Vector.h" #include "PlumedException.h" diff --git a/src/Vector.h b/src/Vector.h index 91e96e64c..6ba047722 100644 --- a/src/Vector.h +++ b/src/Vector.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_Vector_h #define __PLUMED_Vector_h diff --git a/src/WithCmd.h b/src/WithCmd.h index 9adc39a17..c1fc2a480 100644 --- a/src/WithCmd.h +++ b/src/WithCmd.h @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #ifndef __PLUMED_WithCmd_h #define __PLUMED_WithCmd_h diff --git a/src/header.sh b/src/header.sh index 0025cb661..7bb612974 100755 --- a/src/header.sh +++ b/src/header.sh @@ -15,25 +15,25 @@ plus="+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++" cat << EOF /* $plus - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. $plus */ EOF diff --git a/src/main.cpp b/src/main.cpp index b42517835..f6824cb28 100644 --- a/src/main.cpp +++ b/src/main.cpp @@ -1,23 +1,23 @@ /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - Copyright (c) 2012 The PLUMED team + Copyright (c) 2012 The plumed team (see the PEOPLE file at the root of the distribution for a list of names) See http://www.plumed-code.org for more information. - This file is part of PLUMED, version 2.0. + This file is part of plumed, version 2.0. - PLUMED is free software: you can redistribute it and/or modify + plumed is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - PLUMED is distributed in the hope that it will be useful, + plumed is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License - along with PLUMED. If not, see <http://www.gnu.org/licenses/>. + along with plumed. If not, see <http://www.gnu.org/licenses/>. +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */ #include "Plumed.h" #include <cstring> -- GitLab