From 78b9dc5374514fc211c03f45448f8dadf20db69d Mon Sep 17 00:00:00 2001
From: Giovanni Bussi <giovanni.bussi@gmail.com>
Date: Tue, 11 Dec 2012 09:43:03 +0100
Subject: [PATCH] Moved vessel-base to vesselbase

---
 src/multicolvar/Makefile                                 | 2 +-
 src/multicolvar/MultiColvar.cpp                          | 2 +-
 src/multicolvar/MultiColvar.h                            | 2 +-
 src/multicolvar/VesselCVdens.cpp                         | 4 ++--
 src/multicolvar/VesselMean.cpp                           | 4 ++--
 src/multicolvar/VesselWithin.cpp                         | 4 ++--
 src/{vessel-base => vesselbase}/.gitignore               | 0
 src/{vessel-base => vesselbase}/ActionWithVessel.cpp     | 0
 src/{vessel-base => vesselbase}/ActionWithVessel.h       | 0
 src/{vessel-base => vesselbase}/Makefile                 | 0
 src/{vessel-base => vesselbase}/NormedSumVessel.cpp      | 0
 src/{vessel-base => vesselbase}/NormedSumVessel.h        | 0
 src/{vessel-base => vesselbase}/SumVessel.cpp            | 0
 src/{vessel-base => vesselbase}/SumVessel.h              | 0
 src/{vessel-base => vesselbase}/Vessel.cpp               | 0
 src/{vessel-base => vesselbase}/Vessel.h                 | 0
 src/{vessel-base => vesselbase}/VesselAccumulator.cpp    | 0
 src/{vessel-base => vesselbase}/VesselAccumulator.h      | 0
 src/{vessel-base => vesselbase}/VesselLessThan.cpp       | 0
 src/{vessel-base => vesselbase}/VesselMin.cpp            | 0
 src/{vessel-base => vesselbase}/VesselMoment.cpp         | 0
 src/{vessel-base => vesselbase}/VesselMoreThan.cpp       | 0
 src/{vessel-base => vesselbase}/VesselRegister.cpp       | 0
 src/{vessel-base => vesselbase}/VesselRegister.h         | 0
 src/{vessel-base => vesselbase}/VesselStoreAllValues.cpp | 0
 src/{vessel-base => vesselbase}/VesselStoreAllValues.h   | 0
 src/{vessel-base => vesselbase}/VesselSum.cpp            | 0
 src/{vessel-base => vesselbase}/VesselValueAccess.cpp    | 0
 src/{vessel-base => vesselbase}/VesselValueAccess.h      | 0
 src/{vessel-base => vesselbase}/module.type              | 0
 30 files changed, 9 insertions(+), 9 deletions(-)
 rename src/{vessel-base => vesselbase}/.gitignore (100%)
 rename src/{vessel-base => vesselbase}/ActionWithVessel.cpp (100%)
 rename src/{vessel-base => vesselbase}/ActionWithVessel.h (100%)
 rename src/{vessel-base => vesselbase}/Makefile (100%)
 rename src/{vessel-base => vesselbase}/NormedSumVessel.cpp (100%)
 rename src/{vessel-base => vesselbase}/NormedSumVessel.h (100%)
 rename src/{vessel-base => vesselbase}/SumVessel.cpp (100%)
 rename src/{vessel-base => vesselbase}/SumVessel.h (100%)
 rename src/{vessel-base => vesselbase}/Vessel.cpp (100%)
 rename src/{vessel-base => vesselbase}/Vessel.h (100%)
 rename src/{vessel-base => vesselbase}/VesselAccumulator.cpp (100%)
 rename src/{vessel-base => vesselbase}/VesselAccumulator.h (100%)
 rename src/{vessel-base => vesselbase}/VesselLessThan.cpp (100%)
 rename src/{vessel-base => vesselbase}/VesselMin.cpp (100%)
 rename src/{vessel-base => vesselbase}/VesselMoment.cpp (100%)
 rename src/{vessel-base => vesselbase}/VesselMoreThan.cpp (100%)
 rename src/{vessel-base => vesselbase}/VesselRegister.cpp (100%)
 rename src/{vessel-base => vesselbase}/VesselRegister.h (100%)
 rename src/{vessel-base => vesselbase}/VesselStoreAllValues.cpp (100%)
 rename src/{vessel-base => vesselbase}/VesselStoreAllValues.h (100%)
 rename src/{vessel-base => vesselbase}/VesselSum.cpp (100%)
 rename src/{vessel-base => vesselbase}/VesselValueAccess.cpp (100%)
 rename src/{vessel-base => vesselbase}/VesselValueAccess.h (100%)
 rename src/{vessel-base => vesselbase}/module.type (100%)

diff --git a/src/multicolvar/Makefile b/src/multicolvar/Makefile
index ee7634d37..8d67390a9 100644
--- a/src/multicolvar/Makefile
+++ b/src/multicolvar/Makefile
@@ -1,4 +1,4 @@
-USE=core tools vessel-base
+USE=core tools vesselbase
 BUILDAFTER=config
 
 # generic makefile
diff --git a/src/multicolvar/MultiColvar.cpp b/src/multicolvar/MultiColvar.cpp
index 9b83aa7fb..366c399a2 100644
--- a/src/multicolvar/MultiColvar.cpp
+++ b/src/multicolvar/MultiColvar.cpp
@@ -23,7 +23,7 @@
 #include "core/PlumedMain.h"
 #include "core/ActionSet.h"
 #include "core/SetupMolInfo.h"
-#include "vessel-base/Vessel.h"
+#include "vesselbase/Vessel.h"
 #include "tools/Pbc.h"
 #include <vector>
 #include <string>
diff --git a/src/multicolvar/MultiColvar.h b/src/multicolvar/MultiColvar.h
index 38e90252b..a82f45a0a 100644
--- a/src/multicolvar/MultiColvar.h
+++ b/src/multicolvar/MultiColvar.h
@@ -24,7 +24,7 @@
 
 #include "core/ActionAtomistic.h"
 #include "core/ActionWithValue.h"
-#include "vessel-base/ActionWithVessel.h"
+#include "vesselbase/ActionWithVessel.h"
 #include <vector>
 
 #define PLUMED_MULTICOLVAR_INIT(ao) Action(ao),MultiColvar(ao)
diff --git a/src/multicolvar/VesselCVdens.cpp b/src/multicolvar/VesselCVdens.cpp
index e9a5ecd91..988859f20 100644
--- a/src/multicolvar/VesselCVdens.cpp
+++ b/src/multicolvar/VesselCVdens.cpp
@@ -22,8 +22,8 @@
 
 #include "core/PlumedMain.h"
 #include "core/ActionSet.h"
-#include "vessel-base/VesselRegister.h"
-#include "vessel-base/NormedSumVessel.h"
+#include "vesselbase/VesselRegister.h"
+#include "vesselbase/NormedSumVessel.h"
 #include "ActionVolume.h"
 #include "MultiColvar.h"
 #include "tools/HistogramBead.h"
diff --git a/src/multicolvar/VesselMean.cpp b/src/multicolvar/VesselMean.cpp
index 06be7c78d..c2b887689 100644
--- a/src/multicolvar/VesselMean.cpp
+++ b/src/multicolvar/VesselMean.cpp
@@ -19,8 +19,8 @@
    You should have received a copy of the GNU Lesser General Public License
    along with plumed.  If not, see <http://www.gnu.org/licenses/>.
 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */
-#include "vessel-base/VesselRegister.h"
-#include "vessel-base/NormedSumVessel.h"
+#include "vesselbase/VesselRegister.h"
+#include "vesselbase/NormedSumVessel.h"
 #include "MultiColvar.h"
 
 namespace PLMD {
diff --git a/src/multicolvar/VesselWithin.cpp b/src/multicolvar/VesselWithin.cpp
index e864c7d2e..95241ac98 100644
--- a/src/multicolvar/VesselWithin.cpp
+++ b/src/multicolvar/VesselWithin.cpp
@@ -20,8 +20,8 @@
    along with plumed.  If not, see <http://www.gnu.org/licenses/>.
 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */
 
-#include "vessel-base/VesselRegister.h"
-#include "vessel-base/NormedSumVessel.h"
+#include "vesselbase/VesselRegister.h"
+#include "vesselbase/NormedSumVessel.h"
 #include "MultiColvar.h"
 #include "tools/HistogramBead.h"
 
diff --git a/src/vessel-base/.gitignore b/src/vesselbase/.gitignore
similarity index 100%
rename from src/vessel-base/.gitignore
rename to src/vesselbase/.gitignore
diff --git a/src/vessel-base/ActionWithVessel.cpp b/src/vesselbase/ActionWithVessel.cpp
similarity index 100%
rename from src/vessel-base/ActionWithVessel.cpp
rename to src/vesselbase/ActionWithVessel.cpp
diff --git a/src/vessel-base/ActionWithVessel.h b/src/vesselbase/ActionWithVessel.h
similarity index 100%
rename from src/vessel-base/ActionWithVessel.h
rename to src/vesselbase/ActionWithVessel.h
diff --git a/src/vessel-base/Makefile b/src/vesselbase/Makefile
similarity index 100%
rename from src/vessel-base/Makefile
rename to src/vesselbase/Makefile
diff --git a/src/vessel-base/NormedSumVessel.cpp b/src/vesselbase/NormedSumVessel.cpp
similarity index 100%
rename from src/vessel-base/NormedSumVessel.cpp
rename to src/vesselbase/NormedSumVessel.cpp
diff --git a/src/vessel-base/NormedSumVessel.h b/src/vesselbase/NormedSumVessel.h
similarity index 100%
rename from src/vessel-base/NormedSumVessel.h
rename to src/vesselbase/NormedSumVessel.h
diff --git a/src/vessel-base/SumVessel.cpp b/src/vesselbase/SumVessel.cpp
similarity index 100%
rename from src/vessel-base/SumVessel.cpp
rename to src/vesselbase/SumVessel.cpp
diff --git a/src/vessel-base/SumVessel.h b/src/vesselbase/SumVessel.h
similarity index 100%
rename from src/vessel-base/SumVessel.h
rename to src/vesselbase/SumVessel.h
diff --git a/src/vessel-base/Vessel.cpp b/src/vesselbase/Vessel.cpp
similarity index 100%
rename from src/vessel-base/Vessel.cpp
rename to src/vesselbase/Vessel.cpp
diff --git a/src/vessel-base/Vessel.h b/src/vesselbase/Vessel.h
similarity index 100%
rename from src/vessel-base/Vessel.h
rename to src/vesselbase/Vessel.h
diff --git a/src/vessel-base/VesselAccumulator.cpp b/src/vesselbase/VesselAccumulator.cpp
similarity index 100%
rename from src/vessel-base/VesselAccumulator.cpp
rename to src/vesselbase/VesselAccumulator.cpp
diff --git a/src/vessel-base/VesselAccumulator.h b/src/vesselbase/VesselAccumulator.h
similarity index 100%
rename from src/vessel-base/VesselAccumulator.h
rename to src/vesselbase/VesselAccumulator.h
diff --git a/src/vessel-base/VesselLessThan.cpp b/src/vesselbase/VesselLessThan.cpp
similarity index 100%
rename from src/vessel-base/VesselLessThan.cpp
rename to src/vesselbase/VesselLessThan.cpp
diff --git a/src/vessel-base/VesselMin.cpp b/src/vesselbase/VesselMin.cpp
similarity index 100%
rename from src/vessel-base/VesselMin.cpp
rename to src/vesselbase/VesselMin.cpp
diff --git a/src/vessel-base/VesselMoment.cpp b/src/vesselbase/VesselMoment.cpp
similarity index 100%
rename from src/vessel-base/VesselMoment.cpp
rename to src/vesselbase/VesselMoment.cpp
diff --git a/src/vessel-base/VesselMoreThan.cpp b/src/vesselbase/VesselMoreThan.cpp
similarity index 100%
rename from src/vessel-base/VesselMoreThan.cpp
rename to src/vesselbase/VesselMoreThan.cpp
diff --git a/src/vessel-base/VesselRegister.cpp b/src/vesselbase/VesselRegister.cpp
similarity index 100%
rename from src/vessel-base/VesselRegister.cpp
rename to src/vesselbase/VesselRegister.cpp
diff --git a/src/vessel-base/VesselRegister.h b/src/vesselbase/VesselRegister.h
similarity index 100%
rename from src/vessel-base/VesselRegister.h
rename to src/vesselbase/VesselRegister.h
diff --git a/src/vessel-base/VesselStoreAllValues.cpp b/src/vesselbase/VesselStoreAllValues.cpp
similarity index 100%
rename from src/vessel-base/VesselStoreAllValues.cpp
rename to src/vesselbase/VesselStoreAllValues.cpp
diff --git a/src/vessel-base/VesselStoreAllValues.h b/src/vesselbase/VesselStoreAllValues.h
similarity index 100%
rename from src/vessel-base/VesselStoreAllValues.h
rename to src/vesselbase/VesselStoreAllValues.h
diff --git a/src/vessel-base/VesselSum.cpp b/src/vesselbase/VesselSum.cpp
similarity index 100%
rename from src/vessel-base/VesselSum.cpp
rename to src/vesselbase/VesselSum.cpp
diff --git a/src/vessel-base/VesselValueAccess.cpp b/src/vesselbase/VesselValueAccess.cpp
similarity index 100%
rename from src/vessel-base/VesselValueAccess.cpp
rename to src/vesselbase/VesselValueAccess.cpp
diff --git a/src/vessel-base/VesselValueAccess.h b/src/vesselbase/VesselValueAccess.h
similarity index 100%
rename from src/vessel-base/VesselValueAccess.h
rename to src/vesselbase/VesselValueAccess.h
diff --git a/src/vessel-base/module.type b/src/vesselbase/module.type
similarity index 100%
rename from src/vessel-base/module.type
rename to src/vesselbase/module.type
-- 
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