From 68b58845ec8826cee8b0c443e744dddf85b852eb Mon Sep 17 00:00:00 2001
From: Giovanni Bussi <giovanni.bussi@gmail.com>
Date: Fri, 2 Mar 2018 19:30:24 +0100
Subject: [PATCH] Fixed some ref

---
 src/bias/MetaD.cpp                   | 2 +-
 src/colvar/ERMSD.cpp                 | 2 +-
 src/generic/EffectiveEnergyDrift.cpp | 2 +-
 user-doc/bibliography.bib            | 6 +++++-
 4 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/src/bias/MetaD.cpp b/src/bias/MetaD.cpp
index b4f09a893..5820edf18 100644
--- a/src/bias/MetaD.cpp
+++ b/src/bias/MetaD.cpp
@@ -925,7 +925,7 @@ MetaD::MetaD(const ActionOptions& ao):
   if(targetfilename_.length()>0) {
     log<<plumed.cite("White, Dama, and Voth, J. Chem. Theory Comput. 11, 2451 (2015)");
     log<<plumed.cite("Marinelli and Faraldo-Gómez,  Biophys. J. 108, 2779 (2015)");
-    log<<plumed.cite("Gil-Ley, Bottaro, and Bussi, submitted (2016)");
+    log<<plumed.cite("Gil-Ley, Bottaro, and Bussi, J. Chem. Theory Comput. 12, 2790 (2016)");
   }
   log<<"\n";
 }
diff --git a/src/colvar/ERMSD.cpp b/src/colvar/ERMSD.cpp
index e221a7b5e..88ef6e624 100644
--- a/src/colvar/ERMSD.cpp
+++ b/src/colvar/ERMSD.cpp
@@ -187,7 +187,7 @@ ERMSD::ERMSD(const ActionOptions&ao):
 
   log<<"  Bibliography "
      <<plumed.cite("Bottaro, Di Palma, and Bussi, Nucleic Acids Res. 42, 13306 (2014)")
-     <<plumed.cite("Bottaro, Banas, Sponer, and Bussi, submitted (2016)")<<"\n";
+     <<plumed.cite("Bottaro, Banas, Sponer, and Bussi, J. Phys. Chem. Lett. 7, 4032 (2016)")<<"\n";
 
 }
 
diff --git a/src/generic/EffectiveEnergyDrift.cpp b/src/generic/EffectiveEnergyDrift.cpp
index 21e515fd3..84d2ca300 100644
--- a/src/generic/EffectiveEnergyDrift.cpp
+++ b/src/generic/EffectiveEnergyDrift.cpp
@@ -165,7 +165,7 @@ EffectiveEnergyDrift::EffectiveEnergyDrift(const ActionOptions&ao):
     if(multi_sim_comm.Get_size()<2) error("You CANNOT run Replica-Averaged simulations without running multiple replicas!\n");
   }
 
-  log<<"Bibliography "<<cite("Ferrarotti, Bottaro, Perez-Villa, and Bussi, submitted (2014)")<<"\n";
+  log<<"Bibliography "<<cite("Ferrarotti, Bottaro, Perez-Villa, and Bussi, J. Chem. Theory Comput. 11, 139 (2015)")<<"\n";
 
   //construct biases from ActionWithValue with a component named bias
   vector<ActionWithValue*> tmpActions=plumed.getActionSet().select<ActionWithValue*>();
diff --git a/user-doc/bibliography.bib b/user-doc/bibliography.bib
index e9e664f51..f4d79187d 100644
--- a/user-doc/bibliography.bib
+++ b/user-doc/bibliography.bib
@@ -2289,7 +2289,11 @@ year = {2015}
 @misc{gil2016empirical,
   title={Empirical corrections to the Amber RNA force field with Target Metadynamics},
   author={Gil-Ley, Alejandro and Bussi, Giovanni},
-  note={submitted}
+  journal={J. Chem. Theory Comput.},
+  volume={12},
+  number={6},
+  pages={2790--2798},
+  year={2016}
 }
 
 
-- 
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