diff --git a/src/bias/MetaD.cpp b/src/bias/MetaD.cpp
index b4f09a8936684b699f5aa763896eb4ad2b845042..5820edf1802a55f503a6a4df2b80f5cc31e99720 100644
--- a/src/bias/MetaD.cpp
+++ b/src/bias/MetaD.cpp
@@ -925,7 +925,7 @@ MetaD::MetaD(const ActionOptions& ao):
   if(targetfilename_.length()>0) {
     log<<plumed.cite("White, Dama, and Voth, J. Chem. Theory Comput. 11, 2451 (2015)");
     log<<plumed.cite("Marinelli and Faraldo-Gómez,  Biophys. J. 108, 2779 (2015)");
-    log<<plumed.cite("Gil-Ley, Bottaro, and Bussi, submitted (2016)");
+    log<<plumed.cite("Gil-Ley, Bottaro, and Bussi, J. Chem. Theory Comput. 12, 2790 (2016)");
   }
   log<<"\n";
 }
diff --git a/src/colvar/ERMSD.cpp b/src/colvar/ERMSD.cpp
index e221a7b5e08a2fb73df729ae61b9dcd891a8ec24..88ef6e6242dddf2e44eece52427050afad58577c 100644
--- a/src/colvar/ERMSD.cpp
+++ b/src/colvar/ERMSD.cpp
@@ -187,7 +187,7 @@ ERMSD::ERMSD(const ActionOptions&ao):
 
   log<<"  Bibliography "
      <<plumed.cite("Bottaro, Di Palma, and Bussi, Nucleic Acids Res. 42, 13306 (2014)")
-     <<plumed.cite("Bottaro, Banas, Sponer, and Bussi, submitted (2016)")<<"\n";
+     <<plumed.cite("Bottaro, Banas, Sponer, and Bussi, J. Phys. Chem. Lett. 7, 4032 (2016)")<<"\n";
 
 }
 
diff --git a/src/generic/EffectiveEnergyDrift.cpp b/src/generic/EffectiveEnergyDrift.cpp
index 21e515fd3c6d76c1fc45bbae198250258ee55ca4..84d2ca3001f7186023f3ecbb45392473e38b1312 100644
--- a/src/generic/EffectiveEnergyDrift.cpp
+++ b/src/generic/EffectiveEnergyDrift.cpp
@@ -165,7 +165,7 @@ EffectiveEnergyDrift::EffectiveEnergyDrift(const ActionOptions&ao):
     if(multi_sim_comm.Get_size()<2) error("You CANNOT run Replica-Averaged simulations without running multiple replicas!\n");
   }
 
-  log<<"Bibliography "<<cite("Ferrarotti, Bottaro, Perez-Villa, and Bussi, submitted (2014)")<<"\n";
+  log<<"Bibliography "<<cite("Ferrarotti, Bottaro, Perez-Villa, and Bussi, J. Chem. Theory Comput. 11, 139 (2015)")<<"\n";
 
   //construct biases from ActionWithValue with a component named bias
   vector<ActionWithValue*> tmpActions=plumed.getActionSet().select<ActionWithValue*>();
diff --git a/user-doc/bibliography.bib b/user-doc/bibliography.bib
index e9e664f5109a235562fc194607044eb17c14e561..f4d79187d6ed61d56f35e9a7914a7d644495b91a 100644
--- a/user-doc/bibliography.bib
+++ b/user-doc/bibliography.bib
@@ -2289,7 +2289,11 @@ year = {2015}
 @misc{gil2016empirical,
   title={Empirical corrections to the Amber RNA force field with Target Metadynamics},
   author={Gil-Ley, Alejandro and Bussi, Giovanni},
-  note={submitted}
+  journal={J. Chem. Theory Comput.},
+  volume={12},
+  number={6},
+  pages={2790--2798},
+  year={2016}
 }