From 623fc9704fce70f1e8b28a60e59c29f38f5300f6 Mon Sep 17 00:00:00 2001
From: carlocamilloni <carlo.camilloni@gmail.com>
Date: Wed, 10 Oct 2018 13:49:56 +0200
Subject: [PATCH] removed USE_ALL_DATA from examples - dumpgrid - pca - mds

---
 src/analysis/ClassicalMultiDimensionalScaling.cpp | 1 -
 src/analysis/PCA.cpp                              | 2 +-
 src/gridtools/DumpGrid.cpp                        | 1 -
 3 files changed, 1 insertion(+), 3 deletions(-)

diff --git a/src/analysis/ClassicalMultiDimensionalScaling.cpp b/src/analysis/ClassicalMultiDimensionalScaling.cpp
index 11905a0cc..472ee4a54 100644
--- a/src/analysis/ClassicalMultiDimensionalScaling.cpp
+++ b/src/analysis/ClassicalMultiDimensionalScaling.cpp
@@ -59,7 +59,6 @@ The RMSD distance between atoms 1-256 have moved is used to measure the distance
 CLASSICAL_MDS ...
   ATOMS=1-256
   METRIC=OPTIMAL-FAST
-  USE_ALL_DATA
   NLOW_DIM=2
   OUTPUT_FILE=rmsd-embed
 ... CLASSICAL_MDS
diff --git a/src/analysis/PCA.cpp b/src/analysis/PCA.cpp
index 532385c01..49a26259a 100644
--- a/src/analysis/PCA.cpp
+++ b/src/analysis/PCA.cpp
@@ -64,7 +64,7 @@ The first two principal components will be output to a file called pca-comp.pdb.
 will be performed at the end of the simulation.
 
 \verbatim
-PCA METRIC=OPTIMAL ATOMS=1-22 STRIDE=1 USE_ALL_DATA NLOW_DIM=2 OFILE=pca-comp.pdb
+PCA METRIC=OPTIMAL ATOMS=1-22 STRIDE=1 NLOW_DIM=2 OFILE=pca-comp.pdb
 \endverbatim
 
 The following input instructs PLUMED to perform a principal component analysis in which the covariance matrix is calculated from chnages in the six distances
diff --git a/src/gridtools/DumpGrid.cpp b/src/gridtools/DumpGrid.cpp
index 2ba3fae9c..b1a8ed340 100644
--- a/src/gridtools/DumpGrid.cpp
+++ b/src/gridtools/DumpGrid.cpp
@@ -89,7 +89,6 @@ TORSION ATOMS=1,2,3,4 LABEL=r1
 TORSION ATOMS=2,3,4,5 LABEL=r2
 HISTOGRAM ...
   ARG=r1,r2
-  USE_ALL_DATA
   KERNEL=DISCRETE
   GRID_MIN=-3.14,-3.14
   GRID_MAX=3.14,3.14
-- 
GitLab