diff --git a/developer-doc/Doxyfile.in b/developer-doc/Doxyfile.in index 13d8650ef201b4cdb8db9e1a1013ae102d7b3583..ec6b3fc8c16d5edef666bd73bcf3ef33c9302dcb 100644 --- a/developer-doc/Doxyfile.in +++ b/developer-doc/Doxyfile.in @@ -660,13 +660,13 @@ HTML_FILE_EXTENSION = .html # each generated HTML page. If it is left blank doxygen will generate a # standard header. -HTML_HEADER = +HTML_HEADER = PlumedDeveloperHeader.html # The HTML_FOOTER tag can be used to specify a personal HTML footer for # each generated HTML page. If it is left blank doxygen will generate a # standard footer. -HTML_FOOTER = +HTML_FOOTER = PlumedFooter.html # The HTML_STYLESHEET tag can be used to specify a user-defined cascading # style sheet that is used by each HTML page. It can be used to @@ -677,6 +677,12 @@ HTML_FOOTER = HTML_STYLESHEET = +# Change the colorschme to make it match the plumed logo + +HTML_COLORSTYLE_HUE = 0 +HTML_COLORSTYLE_SAT = 200 +HTML_COLORSTYLE_GAMMA = 100 + # If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes, # files or namespaces will be aligned in HTML using tables. If set to # NO a bullet list will be used. @@ -1252,6 +1258,10 @@ GENERATE_LEGEND = YES DOT_CLEANUP = YES +# More beautiful equations + +USE_MATHJAX = YES + #--------------------------------------------------------------------------- # Configuration::additions related to the search engine #--------------------------------------------------------------------------- diff --git a/developer-doc/PlumedDeveloperHeader.html b/developer-doc/PlumedDeveloperHeader.html new file mode 100644 index 0000000000000000000000000000000000000000..f3384bf853a6a9b2d950bdd6e2244ba9c1921705 --- /dev/null +++ b/developer-doc/PlumedDeveloperHeader.html @@ -0,0 +1,66 @@ +<!-- HTML header for doxygen 1.8.3.1--> +<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> +<html xmlns="http://www.w3.org/1999/xhtml"> +<head> +<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/> +<meta http-equiv="X-UA-Compatible" content="IE=9"/> +<meta name="generator" content="Doxygen $doxygenversion"/> +<!--BEGIN PROJECT_NAME--><title>$projectname: $title</title><!--END PROJECT_NAME--> +<!--BEGIN !PROJECT_NAME--><title>$title</title><!--END !PROJECT_NAME--> +<link href="$relpath^tabs.css" rel="stylesheet" type="text/css"/> +<script type="text/javascript" src="$relpath^jquery.js"></script> +<script type="text/javascript" src="$relpath^dynsections.js"></script> +$treeview +$search +$mathjax +<link href="$relpath^$stylesheet" rel="stylesheet" type="text/css" /> +$extrastylesheet +</head> +<body> +<div id="top"><!-- do not remove this div, it is closed by doxygen! --> + +<!--BEGIN TITLEAREA--> +<div id="titlearea"> +<table cellspacing="0" cellpadding="0"> +<tbody> +<tr style="height: 30px;"> +<td valign="center"> <img src="../pigeon.png" width="120"/></td> +<td style="padding-left: 0.2em;" width="74%"> <img src="../logo.png" width="400" /> </td> +<td style="padding-left: 0.2em;" align="right"> <a href="../../user-doc/html/index.html"> <img src="../developer-logo.png" width="180" /> </a> </td> +</tr> +</tbody> +</table> +<!-- +<table cellspacing="0" cellpadding="0"> + <tbody> + <tr style="height: 56px;"> + <!--BEGIN PROJECT_LOGO--> + <td id="projectlogo"><img alt="Logo" src="$relpath^$projectlogo"/></td> + <!--END PROJECT_LOGO--> + <!--BEGIN PROJECT_NAME--> + <td style="padding-left: 0.5em;"> + <div id="projectname">$projectname + <!--BEGIN PROJECT_NUMBER--> <span id="projectnumber">$projectnumber</span><!--END PROJECT_NUMBER--> + </div> + <!--BEGIN PROJECT_BRIEF--><div id="projectbrief">$projectbrief</div><!--END PROJECT_BRIEF--> + </td> + <!--END PROJECT_NAME--> + <!--BEGIN !PROJECT_NAME--> + <!--BEGIN PROJECT_BRIEF--> + <td style="padding-left: 0.5em;"> + <div id="projectbrief">$projectbrief</div> + </td> + <!--END PROJECT_BRIEF--> + <!--END !PROJECT_NAME--> + <!--BEGIN DISABLE_INDEX--> + <!--BEGIN SEARCHENGINE--> + <td>$searchbox</td> + <!--END SEARCHENGINE--> + <!--END DISABLE_INDEX--> + </tr> + </tbody> +</table> +--> +</div> +<!--END TITLEAREA--> +<!-- end header part --> diff --git a/developer-doc/PlumedFooter.html b/developer-doc/PlumedFooter.html new file mode 100644 index 0000000000000000000000000000000000000000..04224dca77845a55f597aabddece9120a3ca81e4 --- /dev/null +++ b/developer-doc/PlumedFooter.html @@ -0,0 +1,28 @@ +<!-- HTML footer for doxygen 1.8.3.1--> +<!-- start footer part --> +<!--BEGIN GENERATE_TREEVIEW--> +<div id="nav-path" class="navpath"><!-- id is needed for treeview function! --> + <ul> +<!-- $navpath --> + <li class="footer"> <!--- $generatedby --> + <a href="http://www.doxygen.org/index.html"> + <img class="footer" src="$relpath^doxygen.png" alt="doxygen"/></a> $doxygenversion </li> + </ul> +</div> +<!--END GENERATE_TREEVIEW--> +<!--BEGIN !GENERATE_TREEVIEW--> +<hr class="footer"/><address class="footer"><small> +<table> +<tr><td align="left" valign="center"> +Hosted by +<a href="http://developer.berlios.de"><img src="http://developer.berlios.de/bslogo.php?group_id=11362" width="124" height="32" alt="BerliOS Logo" /></a> +<!--$generatedby   --> <a href="http://www.doxygen.org/index.html"> +</td><td width=88% align="right"> +<img class="footer" src="$relpath^doxygen.png" alt="doxygen" align="right"/> +</a> $doxygenversion +</td> </tr> +</table> +</small></address> +<!--END !GENERATE_TREEVIEW--> +</body> +</html> diff --git a/developer-doc/developer-logo.png b/developer-doc/developer-logo.png new file mode 100644 index 0000000000000000000000000000000000000000..966c2ed7c393743cdf8cb7fdfb31ec8a93bf9c13 Binary files /dev/null and b/developer-doc/developer-logo.png differ diff --git a/developer-doc/logo.png b/developer-doc/logo.png new file mode 100644 index 0000000000000000000000000000000000000000..8e71fa9e14d3b80c609de895320ecd0d1547289e Binary files /dev/null and b/developer-doc/logo.png differ diff --git a/developer-doc/pigeon.png b/developer-doc/pigeon.png new file mode 100644 index 0000000000000000000000000000000000000000..4637ada474303effe9c3bb0d92c86e5f919c61f5 Binary files /dev/null and b/developer-doc/pigeon.png differ diff --git a/user-doc/PlumedUserHeader.html b/user-doc/PlumedUserHeader.html index f06a54b95e7f56df3f2990619fc0fab8f2b27f17..483acb912b65bf2dffe5275bfe3cea82b2848601 100644 --- a/user-doc/PlumedUserHeader.html +++ b/user-doc/PlumedUserHeader.html @@ -26,7 +26,7 @@ $extrastylesheet <tr style="height: 30px;"> <td valign="center"> <img src="../pigeon.png" width="120"/></td> <td style="padding-left: 0.2em;" width="74%"> <img src="../logo.png" width="400" /> </td> -<td style="padding-left: 0.2em;" align="right"> <img src="../user-logo.png" width="180" /> </td> +<td style="padding-left: 0.2em;" align="right"> <a href="../../developer-doc/html/index.html"> <img src="../user-logo.png" width="180" /> </a> </td> </tr> </tbody> </table>