diff --git a/user-doc/Intro.txt b/user-doc/Intro.txt index cf0b0d5c04c8300fc4e9ff27c4ecc440ca6c4ab7..0d0216f8c3b658717e59f8d32a998d027bf9f99c 100644 --- a/user-doc/Intro.txt +++ b/user-doc/Intro.txt @@ -4,7 +4,7 @@ \warning This is the manual for the development version of PLUMED. It might contain buggy code. See this page: \ref CHANGES-UNRELEASED -PLUMED is a plugin that works with a large number of molecular dynamics codes. It can be used +PLUMED \cite plumed1 is a plugin that works with a large number of molecular dynamics codes. It can be used to analyse features of the dynamics on-the-fly or to perform a wide variety of free energy methods. The original PLUMED 1 was highly successful and had over 1000 users. PLUMED 2 \cite plumed2 constitues an extensive rewrite of the original in a way that makes it more modular and thus easier to implement diff --git a/user-doc/bibliography.bib b/user-doc/bibliography.bib index 2f7ff66c8288c1de683cb470937b39915561c4a4..10fd9ac901b8aa11d5336f4ee163a84edf7256ff 100644 --- a/user-doc/bibliography.bib +++ b/user-doc/bibliography.bib @@ -1384,6 +1384,18 @@ journal = { J. Chem. Phys. } Volume = {130}, Year = {2008}} + +@article{plumed1, +author = {Bonomi, Massimiliano and Branduardi, Davide and Bussi, Giovanni and Camilloni, Carlo and Provasi, Davide and Raiteri, Paolo and Donadio, Davide and Marinelli, Fabrizio and Pietrucci, Fabio and Broglia, Ricardo A and Parrinello, Michele}, +title = {{PLUMED: A portable plugin for free-energy calculations with molecular dynamics}}, +journal = {Computer Physics Communications}, +year = {2009}, +volume = {180}, +number = {10}, +pages = {1961--1972} +} + + @book{zwan+01book, Address = {New York}, Author = {Robert Zwanzig},