From 138dec56a3315693a81eb4d69b401d45a5058395 Mon Sep 17 00:00:00 2001
From: Gareth Tribello <gareth.tribello@gmail.com>
Date: Mon, 25 Jun 2012 11:31:36 +0200
Subject: [PATCH] Renamed regtests and removed PBC flag from ContactMap

---
 regtest/{rt-gt-27 => rt28}/Makefile              | 0
 regtest/{rt-gt-27 => rt28}/config                | 0
 regtest/{rt-gt-28 => rt28}/derivatives.reference | 0
 regtest/{rt-gt-28 => rt28}/field.1.reference     | 0
 regtest/{rt-gt-28 => rt28}/plumed.dat            | 0
 regtest/{rt-gt-27 => rt28}/trajectory.xyz        | 0
 regtest/{rt-gt-28 => rt29}/Makefile              | 0
 regtest/{rt-gt-28 => rt29}/config                | 0
 regtest/{rt-gt-27 => rt29}/derivatives.reference | 0
 regtest/{rt-gt-27 => rt29}/plumed.dat            | 0
 regtest/{rt-gt-28 => rt29}/trajectory.xyz        | 0
 src/ContactMap.cpp                               | 2 +-
 12 files changed, 1 insertion(+), 1 deletion(-)
 rename regtest/{rt-gt-27 => rt28}/Makefile (100%)
 rename regtest/{rt-gt-27 => rt28}/config (100%)
 rename regtest/{rt-gt-28 => rt28}/derivatives.reference (100%)
 rename regtest/{rt-gt-28 => rt28}/field.1.reference (100%)
 rename regtest/{rt-gt-28 => rt28}/plumed.dat (100%)
 rename regtest/{rt-gt-27 => rt28}/trajectory.xyz (100%)
 rename regtest/{rt-gt-28 => rt29}/Makefile (100%)
 rename regtest/{rt-gt-28 => rt29}/config (100%)
 rename regtest/{rt-gt-27 => rt29}/derivatives.reference (100%)
 rename regtest/{rt-gt-27 => rt29}/plumed.dat (100%)
 rename regtest/{rt-gt-28 => rt29}/trajectory.xyz (100%)

diff --git a/regtest/rt-gt-27/Makefile b/regtest/rt28/Makefile
similarity index 100%
rename from regtest/rt-gt-27/Makefile
rename to regtest/rt28/Makefile
diff --git a/regtest/rt-gt-27/config b/regtest/rt28/config
similarity index 100%
rename from regtest/rt-gt-27/config
rename to regtest/rt28/config
diff --git a/regtest/rt-gt-28/derivatives.reference b/regtest/rt28/derivatives.reference
similarity index 100%
rename from regtest/rt-gt-28/derivatives.reference
rename to regtest/rt28/derivatives.reference
diff --git a/regtest/rt-gt-28/field.1.reference b/regtest/rt28/field.1.reference
similarity index 100%
rename from regtest/rt-gt-28/field.1.reference
rename to regtest/rt28/field.1.reference
diff --git a/regtest/rt-gt-28/plumed.dat b/regtest/rt28/plumed.dat
similarity index 100%
rename from regtest/rt-gt-28/plumed.dat
rename to regtest/rt28/plumed.dat
diff --git a/regtest/rt-gt-27/trajectory.xyz b/regtest/rt28/trajectory.xyz
similarity index 100%
rename from regtest/rt-gt-27/trajectory.xyz
rename to regtest/rt28/trajectory.xyz
diff --git a/regtest/rt-gt-28/Makefile b/regtest/rt29/Makefile
similarity index 100%
rename from regtest/rt-gt-28/Makefile
rename to regtest/rt29/Makefile
diff --git a/regtest/rt-gt-28/config b/regtest/rt29/config
similarity index 100%
rename from regtest/rt-gt-28/config
rename to regtest/rt29/config
diff --git a/regtest/rt-gt-27/derivatives.reference b/regtest/rt29/derivatives.reference
similarity index 100%
rename from regtest/rt-gt-27/derivatives.reference
rename to regtest/rt29/derivatives.reference
diff --git a/regtest/rt-gt-27/plumed.dat b/regtest/rt29/plumed.dat
similarity index 100%
rename from regtest/rt-gt-27/plumed.dat
rename to regtest/rt29/plumed.dat
diff --git a/regtest/rt-gt-28/trajectory.xyz b/regtest/rt29/trajectory.xyz
similarity index 100%
rename from regtest/rt-gt-28/trajectory.xyz
rename to regtest/rt29/trajectory.xyz
diff --git a/src/ContactMap.cpp b/src/ContactMap.cpp
index cb53f1077..e7724d89b 100644
--- a/src/ContactMap.cpp
+++ b/src/ContactMap.cpp
@@ -53,7 +53,7 @@ reduceListAtNextStep(false)
   parseFlag("SUM",dosum);
   bool nopbc=!pbc;
   parseFlag("NOPBC",nopbc);
-  pbc=!nopbc;  parseFlag("PBC",pbc);
+  pbc=!nopbc;  
 
   // Read in the atoms
   std::vector<AtomNumber> t, ga_lista, gb_lista;
-- 
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