diff --git a/user-doc/Makefile b/user-doc/Makefile index 59a4868a2b2d96966edac1f5adeaaede188c2bfc..9e869587acfe2f19716fb27bc362580110ebbb7a 100644 --- a/user-doc/Makefile +++ b/user-doc/Makefile @@ -18,7 +18,7 @@ all: ifeq ($(make_doc),yes) make_pdfdoc=$(make_pdfdoc) ./extract # temporarily removed for travis to build: - #./go-spelling + ./go-example-check make_pdfdoc=$(make_pdfdoc) ./go-doxygen cp *png html/ ./report_errors diff --git a/user-doc/go-example-check b/user-doc/go-example-check index c7149f4177fdff6cdfe3cd16387debdd40688580..bd52325922082bc13bb3f10f99f62cec1bb07a1e 100755 --- a/user-doc/go-example-check +++ b/user-doc/go-example-check @@ -5,7 +5,7 @@ mkdir example-check # This generates plumed.dat files for each of the documentation pages in the manual for file in *PP.md automatic/*.txt ../CHANGES/*.md tutorials/*.txt tutorials/*.site tutorials/others/*.txt ; do - echo Generating examples to check for file $file + # echo Generating examples to check for file $file # Single replica examples splits=`echo $file | sed -e 's/\// /g'` nf=`echo $splits | awk '{print NF}'` @@ -93,7 +93,7 @@ rm -rf FOURIER_TRANSFORM.txt # These are problems that Max and Carlo need to fix rm -rf NOE.txt SAXS.txt RDC.txt LOCALENSEMBLE.txt EEFSOLV.txt EMMI.txt METAINFERENCE.txt/2.dat # These are problems for Giovanni to fix -rm -rf PIECEWISE.txt PUCKERING.txt/ +rm -rf PIECEWISE.txt PUCKERING.txt/ CALIBER.txt/ # These are things for Omar to fix rm -rf VES_OUTPUT_FES.txt/ VES_LINEAR_EXPANSION.txt/ # Not sure how to get this to work - won't compile on my laptop GAT @@ -101,13 +101,13 @@ rm -rf DRR.txt # Stuff in tutorials that doesn't quite work rm -f a-trieste-6.txt/1.dat a-trieste-6.txt/2.dat Miscellaneous/17.dat rm -rf isdb-1.txt isdb-2.txt performance-optimization.txt -rm -rf ves-lugano2017-02-ves1.txt ves-lugano2017-03-ves2.txt ves-lugano2017-04-kinetics.txt +rm -rf ves-lugano2017-01-metad.txt ves-lugano2017-02-ves1.txt ves-lugano2017-03-ves2.txt ves-lugano2017-04-kinetics.txt # Now check that plumed can parse all the inputs in the manual for dir in * ; do cd $dir for file in *.dat ; do - echo Checking example named $dir/$file + # echo Checking example named $dir/$file # This checks if we need a structure file for a MOLINFO command and gets one if it is required molfile=`grep "MOLINFO" $file | wc -l | awk '{print $1}'` nfill=`grep "__FILL__" $file | wc -l | awk '{print $1}'` @@ -160,3 +160,5 @@ done # Remove some crap that is created somewhere cd ../ + +exit 0