diff --git a/src/analysis/EuclideanDissimilarityMatrix.cpp b/src/analysis/EuclideanDissimilarityMatrix.cpp
index 9b9a4c6b7266583cf63bd5655d3458fb0db31614..72f94a46cb9f4bc21307f0f28b6c2daae6bd5db5 100644
--- a/src/analysis/EuclideanDissimilarityMatrix.cpp
+++ b/src/analysis/EuclideanDissimilarityMatrix.cpp
@@ -131,8 +131,10 @@ double EuclideanDissimilarityMatrix::getDissimilarity( const unsigned& iframe, c
}
if( iframe!=jframe ) {
double dd;
- getStoredData( iframe, true ).transferDataToPDB( mypdb ); std::unique_ptr<ReferenceConfiguration> myref1=metricRegister().create<ReferenceConfiguration>(mtype, mypdb);
- getStoredData( jframe, true ).transferDataToPDB( mypdb ); std::unique_ptr<ReferenceConfiguration> myref2=metricRegister().create<ReferenceConfiguration>(mtype, mypdb);
+ getStoredData( iframe, true ).transferDataToPDB( mypdb );
+ auto myref1=metricRegister().create<ReferenceConfiguration>(mtype, mypdb);
+ getStoredData( jframe, true ).transferDataToPDB( mypdb );
+ auto myref2=metricRegister().create<ReferenceConfiguration>(mtype, mypdb);
if( !usingLowMem() ) dd=dissimilarities(iframe,jframe) = dissimilarities(jframe,iframe) = distance( getPbc(), getArguments(), myref1.get(), myref2.get(), true );
else dd=distance( getPbc(), getArguments(), myref1.get(), myref2.get(), true );
return dd;
diff --git a/src/cltools/Driver.cpp b/src/cltools/Driver.cpp
index f5ca94daf5d589ebede6119fe7c921ea7e04a629..8ad5051b534fc90f5d9750f6de338a7e71782978 100644
--- a/src/cltools/Driver.cpp
+++ b/src/cltools/Driver.cpp
@@ -296,7 +296,7 @@ int Driver<real>::main(FILE* in,FILE*out,Communicator& pc) {
}
if(debug_float && sizeof(real)!=sizeof(float)) {
- std::unique_ptr<CLTool> cl(cltoolRegister().create(CLToolOptions("driver-float")));
+ auto cl=cltoolRegister().create(CLToolOptions("driver-float"));
cl->setInputData(this->getInputData());
int ret=cl->main(in,out,pc);
return ret;
diff --git a/src/core/CLToolMain.cpp b/src/core/CLToolMain.cpp
index ef53aa9c521a97f4a4a71e22665bcb4196252f26..ce22e4dfded781f0aef6b2027b37a55b513a40ae 100644
--- a/src/core/CLToolMain.cpp
+++ b/src/core/CLToolMain.cpp
@@ -235,7 +235,7 @@ int CLToolMain::run(int argc, char **argv,FILE*in,FILE*out,Communicator& pc) {
"Commands:\n";
fprintf(out,"%s",msg.c_str());
for(unsigned j=0; j<availableCxx.size(); ++j) {
- std::unique_ptr<CLTool> cl(cltoolRegister().create(CLToolOptions(availableCxx[j])));
+ auto cl=cltoolRegister().create(CLToolOptions(availableCxx[j]));
plumed_assert(cl);
string manual=availableCxx[j]+" : "+cl->description();
fprintf(out," plumed %s\n", manual.c_str());
@@ -260,7 +260,7 @@ int CLToolMain::run(int argc, char **argv,FILE*in,FILE*out,Communicator& pc) {
string command(argv[i]);
if(find(availableCxx.begin(),availableCxx.end(),command)!=availableCxx.end()) {
- std::unique_ptr<CLTool> cl(cltoolRegister().create(CLToolOptions(command)));
+ auto cl=cltoolRegister().create(CLToolOptions(command));
plumed_assert(cl);
// Read the command line options (returns false if we are just printing help)
if( !cl->readInput( argc-i,&argv[i],in,out ) ) { return 0; }
diff --git a/src/core/PlumedMain.cpp b/src/core/PlumedMain.cpp
index 781a80262566741eb2d1470f037bfc9a3d2322ff..46d5bc09623d3db907a4c069355c2330c61dcdf5 100644
--- a/src/core/PlumedMain.cpp
+++ b/src/core/PlumedMain.cpp
@@ -552,7 +552,7 @@ void PlumedMain::readInputWords(const std::vector<std::string> & words) {
} else {
std::vector<std::string> interpreted(words);
Tools::interpretLabel(interpreted);
- std::unique_ptr<Action> action(actionRegister().create(ActionOptions(*this,interpreted)));
+ auto action=actionRegister().create(ActionOptions(*this,interpreted));
if(!action) {
std::string msg;
msg ="ERROR\nI cannot understand line:";
diff --git a/src/dimred/PCA.cpp b/src/dimred/PCA.cpp
index 96a5dbc8f3fe4db6a7ab5640d6c3ec9bd63dea3d..650e55b58e5786bb15d44757fc531fdfcae43c8d 100644
--- a/src/dimred/PCA.cpp
+++ b/src/dimred/PCA.cpp
@@ -155,7 +155,7 @@ PCA::PCA(const ActionOptions&ao):
void PCA::performAnalysis() {
// Align everything to the first frame
my_input_data->getStoredData( 0, false ).transferDataToPDB( mypdb );
- std::unique_ptr<ReferenceConfiguration> myconf0=metricRegister().create<ReferenceConfiguration>(mtype, mypdb);
+ auto myconf0=metricRegister().create<ReferenceConfiguration>(mtype, mypdb);
MultiValue myval( 1, myconf0->getNumberOfReferenceArguments() + 3*myconf0->getNumberOfReferencePositions() + 9 );
ReferenceValuePack mypack( myconf0->getNumberOfReferenceArguments(), myconf0->getNumberOfReferencePositions(), myval );
for(unsigned i=0; i<myconf0->getNumberOfReferencePositions(); ++i) mypack.setAtomIndex( i, i );
diff --git a/src/dimred/SketchMapRead.cpp b/src/dimred/SketchMapRead.cpp
index ba41cb0179b7fb573d9ae3c8db6a51c30eb12f7c..6f2ba3bb228d2038b659c3fcb5f85f13875cecd8 100644
--- a/src/dimred/SketchMapRead.cpp
+++ b/src/dimred/SketchMapRead.cpp
@@ -174,8 +174,10 @@ double SketchMapRead::getDissimilarity( const unsigned& i, const unsigned& j ) {
plumed_assert( i<myframes.size() && j<myframes.size() );
if( i!=j ) {
double dd;
- getStoredData( i, true ).transferDataToPDB( mypdb ); std::unique_ptr<ReferenceConfiguration> myref1=metricRegister().create<ReferenceConfiguration>(mtype, mypdb);
- getStoredData( j, true ).transferDataToPDB( mypdb ); std::unique_ptr<ReferenceConfiguration> myref2=metricRegister().create<ReferenceConfiguration>(mtype, mypdb);
+ getStoredData( i, true ).transferDataToPDB( mypdb );
+ auto myref1=metricRegister().create<ReferenceConfiguration>(mtype, mypdb);
+ getStoredData( j, true ).transferDataToPDB( mypdb );
+ auto myref2=metricRegister().create<ReferenceConfiguration>(mtype, mypdb);
dd=distance( getPbc(), ActionWithArguments::getArguments(), myref1.get(), myref2.get(), true );
return dd;
}
diff --git a/src/mapping/PathTools.cpp b/src/mapping/PathTools.cpp
index ccba660e68446a5424cb33989406d1e330e08d94..ec92f48ab634030e39f2523a4454ecaceaa0d215 100644
--- a/src/mapping/PathTools.cpp
+++ b/src/mapping/PathTools.cpp
@@ -152,7 +152,7 @@ int PathTools::main(FILE* in, FILE*out,Communicator& pc) {
// Read the pdb file
do_read=mypdb.readFromFilepointer(fp,false,0.1);
if( do_read ) {
- std::unique_ptr<ReferenceConfiguration> mymsd(metricRegister().create<ReferenceConfiguration>( mtype, mypdb ));
+ auto mymsd(metricRegister().create<ReferenceConfiguration>( mtype, mypdb ));
frames.emplace_back( std::move(mymsd) );
}
}
@@ -218,14 +218,14 @@ int PathTools::main(FILE* in, FILE*out,Communicator& pc) {
std::string istart; parse("--start",istart); FILE* fp2=fopen(istart.c_str(),"r"); PDB mystartpdb;
if( istart.length()==0 ) error("input is missing use --istart + --iend or --path");
if( !mystartpdb.readFromFilepointer(fp2,false,0.1) ) error("could not read fila " + istart);
- std::unique_ptr<ReferenceConfiguration> sframe( metricRegister().create<ReferenceConfiguration>( mtype, mystartpdb ) );
+ auto sframe=metricRegister().create<ReferenceConfiguration>( mtype, mystartpdb );
fclose(fp2);
// Read final frame
std::string iend; parse("--end",iend); FILE* fp1=fopen(iend.c_str(),"r"); PDB myendpdb;
if( iend.length()==0 ) error("input is missing using --istart + --iend or --path");
if( !myendpdb.readFromFilepointer(fp1,false,0.1) ) error("could not read fila " + iend);
- std::unique_ptr<ReferenceConfiguration> eframe( metricRegister().create<ReferenceConfiguration>( mtype, myendpdb ) );
+ auto eframe=metricRegister().create<ReferenceConfiguration>( mtype, myendpdb );
fclose(fp1);
// Get atoms and arg requests
std::vector<AtomNumber> atoms; std::vector<std::string> arg_names;
diff --git a/src/vesselbase/ActionWithVessel.cpp b/src/vesselbase/ActionWithVessel.cpp
index 31d41772d3aa90ae882681d4c85df791667465c0..391b3b10a33a27372c88636d7679373c04ca6248 100644
--- a/src/vesselbase/ActionWithVessel.cpp
+++ b/src/vesselbase/ActionWithVessel.cpp
@@ -99,7 +99,7 @@ ActionWithVessel::~ActionWithVessel() {
void ActionWithVessel::addVessel( const std::string& name, const std::string& input, const int numlab ) {
VesselOptions da(name,"",numlab,input,this);
- std::unique_ptr<Vessel> vv=vesselRegister().create(name,da);
+ auto vv=vesselRegister().create(name,da);
FunctionVessel* fv=dynamic_cast<FunctionVessel*>(vv.get());
if( fv ) {
std::string mylabel=Vessel::transformName( name );