Commit 52bdc668 authored by Matěj Pekár's avatar Matěj Pekár
Browse files

Merge branch 'develop' into 'master' 

feat: mlkit integration

See merge request rationai/digital-pathology/templates/machine-learning!1
parents e80bbbd3 95f8f378

.flake8

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[flake8]

max-line-length=88

extend-ignore=E203

.gitignore

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@@ -138,7 +138,7 @@ venv.bak/ 
.ropeproject



# mkdocs documentation

/site

site



# mypy

.mypy_cache/
@@ -166,6 +166,10 @@ cython_debug/ 
# Mlflow

mlruns/

mlflow_store/

mlflow_artifacts/



# Pytorch Lightning

lightning_logs/



# PyCharm

#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
@@ -174,12 +178,5 @@ mlflow_store/ 
#  option (not recommended) you can uncomment the following to ignore the entire idea folder.

.idea/



# Ray

/ray_results



# Hydra

/outputs



# Project

/data
 
/models
 
 No newline at end of file

.gitlab-ci.yml

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include:

  project: rationai/digital-pathology/templates/ci-templates

  file:

    - Pytest.gitlab-ci.yml

    - Python-Lint.gitlab-ci.yml

  file: Python-Lint.gitlab-ci.yml



stages:

  - lint
 
  - test

.pre-commit-config.yaml

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@@ -2,23 +2,25 @@ 
# See https://pre-commit.com/hooks.html for more hooks

repos:

  - repo: https://github.com/pre-commit/pre-commit-hooks

    rev: v4.5.0

    rev: v4.6.0

    hooks:

      - id: check-yaml

        args: [--unsafe]



  - repo: https://github.com/compilerla/conventional-pre-commit

    rev: v3.2.0

    rev: v3.4.0

    hooks:

      - id: conventional-pre-commit

        stages: [commit-msg]

        # optional: list of Conventional Commits types to allow e.g. [feat, fix, ci, chore, test]

        args: [exp, build, chore, ci, docs, feat, fix, perf, refactor, revert, style, test]

        args: []



  - repo: https://github.com/astral-sh/ruff-pre-commit

    rev: v0.4.4

    rev: v0.6.0

    hooks:

      # Run the linter.

      - id: ruff

        entry: pdm lint --force-exclude

      #   Run the formatter.

      - id: ruff-format

        entry: pdm format --force-exclude

configs/default.yaml

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defaults:

  - hydra: default

  - logger: mlflow

  - _self_



seed: ${random_seed:}

mode: ???

checkpoint: null



trainer: {}



data: {}



model: {}



metadata:

  user: ???

  experiment_name: ???

  run_name: ???

  description: ???