Commit 85d941b8 authored by Matej Lexa's avatar Matej Lexa
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Updated README.md with dependencies and instructions for running examples on the command line.

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README.md

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# pipelines



Minimal pipeline examples for IV110/IV114 at FI MUNI
 
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## Minimal pipeline examples for IV110/IV114 at FI MUNI



### Dependencies



- make

- nextflow

- snakemake

- clustalw

- EMBOSS cons (as em_cons command)

- R

- R/Bioconductor seqLogo and Biostrings packages



### Instructions to run examples



make all



nextflow run main.nf



snakemake -p set{1,2,3}.fasta_cons.fa