From 85d941b8dee64a2fb101d1de3ff9349c550dda41 Mon Sep 17 00:00:00 2001
From: Matej Lexa <lexa@fi.muni.cz>
Date: Wed, 6 Oct 2021 11:41:49 +0200
Subject: [PATCH] Updated README.md with dependencies and instructions for
 running examples on the command line.

---
 README.md | 21 ++++++++++++++++++++-
 1 file changed, 20 insertions(+), 1 deletion(-)

diff --git a/README.md b/README.md
index f5d6118..d76a02c 100644
--- a/README.md
+++ b/README.md
@@ -1,3 +1,22 @@
 # pipelines
 
-Minimal pipeline examples for IV110/IV114 at FI MUNI
\ No newline at end of file
+## Minimal pipeline examples for IV110/IV114 at FI MUNI
+
+### Dependencies
+
+- make
+- nextflow
+- snakemake
+- clustalw
+- EMBOSS cons (as em_cons command)
+- R
+- R/Bioconductor seqLogo and Biostrings packages
+
+### Instructions to run examples
+
+make all
+
+nextflow run main.nf
+
+snakemake -p set{1,2,3}.fasta_cons.fa
+
-- 
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