Commits · cb1d0fe5c9dc74809d8b8fe951ae82b33181a7a6 · Matej Lexa / nested

Oct 13, 2022
- cleanup round 4 · cb1d0fe5
  Ivan Vanat authored Oct 13, 2022
  
  cb1d0fe5
- cleanup round 3 · 5c50561c
  Ivan Vanat authored Oct 13, 2022
  
  5c50561c
- cleanup round 2 · 0265737d
  Ivan Vanat authored Oct 13, 2022
  
  0265737d
Oct 09, 2022
- code cleanup round 1 · 1c54c320
  Ivan Vanat authored Oct 09, 2022
  
  1c54c320
Oct 07, 2022
- grapher: added to installer as nested-grapher command · 2dc1b080
  Ivan Vanat authored Oct 07, 2022
  
  2dc1b080
- grapher: removing sequences without specified length · 2d1d7dcd
  Ivan Vanat authored Oct 07, 2022
  
  2d1d7dcd
- grapher: handling missing modules · 44c9ed96
  Ivan Vanat authored Oct 07, 2022
  
  44c9ed96
Sep 29, 2022
- grapher: nicer code · 941b0dcf
  Ivan Vanat authored Sep 29, 2022
  
  941b0dcf
- grapher: added csv table export; graph page title · 47321976
  Ivan Vanat authored Sep 29, 2022
  
  47321976
Sep 25, 2022
- grapher: styling and scaling for multiple sequences · a37f8393
  Ivan Vanat authored Sep 25, 2022
  
  a37f8393
Sep 24, 2022
- grapher: added table; styling · 58db6701
  Ivan Vanat authored Sep 24, 2022
  
  58db6701
Sep 23, 2022
- grapher: axis styling · da79a37b
  Ivan Vanat authored Sep 23, 2022
  
  da79a37b
- grapher: added TE family graph; merged graphs into one html file · 511500af
  Ivan Vanat authored Sep 23, 2022
  
  511500af
Sep 16, 2022
- grapher: styling · a14c83aa
  Ivan Vanat authored Sep 16, 2022
  
  a14c83aa
Sep 14, 2022
- grapher: added TE specific metrics · 30a10163
  Ivan Vanat authored Sep 14, 2022
  
  30a10163
Sep 13, 2022
- grapher: WIP coverage graph · 84da15f7
  Ivan Vanat authored Sep 13, 2022
  
  84da15f7
Sep 12, 2022
- grapher: change in data structure, fixed coverage computation · 9aa6e981
  Ivan Vanat authored Sep 12, 2022
  
  9aa6e981
- grapher: compute coverage for all modules per sequence · b471cb51
  Ivan Vanat authored Sep 12, 2022
  
  b471cb51
Sep 11, 2022
- grapher: parsing input gffs · f3930788
  Ivan Vanat authored Sep 11, 2022
  
  f3930788
Sep 10, 2022
- added TE annotation; changed variable names according to conventions · 28369412
  Ivan Vanat authored Sep 10, 2022
  
  28369412
Sep 09, 2022
- modules: added mite filtering; delete tmp files at the end · c67330fc
  Ivan Vanat authored Sep 09, 2022
  
  c67330fc
- modules: fixed sketcher; fixed bug in output generators · 9328f294
  Ivan Vanat authored Sep 09, 2022
  
  9328f294
- modules: miteFinder fix output id · 4e77d509
  Ivan Vanat authored Sep 09, 2022
  
  4e77d509
Aug 30, 2022
- WIP modules: minor fixes; added plotly · cf40a4aa
  Ivan Vanat authored Aug 30, 2022
  
  cf40a4aa
Aug 29, 2022
- WIP modules: updated config template; fixed mite finder module; minor changes in output · 65d408c3
  Ivan Vanat authored Aug 29, 2022
  
  65d408c3
Aug 28, 2022
- modules: fixed wrong sequence range in gff; fixed indexing in solo ltr; minor refactor · 21caa450
  Ivan Vanat authored Aug 28, 2022
  
  21caa450
Aug 22, 2022
- WIP modules: added miteFinder module · 6a2640fe
  Ivan Vanat authored Aug 22, 2022
  
  6a2640fe
Aug 16, 2022
- modules: discovery tool working · 9828544c
  Ivan Vanat authored Aug 16, 2022
  
  9828544c
Aug 15, 2022
- modules - added sketcher and solo ltrs · 4895bfd2
  Ivan Vanat authored Aug 15, 2022
  
  4895bfd2
Aug 05, 2022
- added trf module · e913e354
  Ivan Vanat authored Aug 05, 2022
  
  e913e354
Aug 03, 2022
- WIP modules · e861c8e9
  Ivan Vanat authored Aug 03, 2022
  
  e861c8e9
Jul 12, 2022
- added forgotten fi · 3ad2c761
  Ivan Vanat authored Jul 12, 2022
  
  3ad2c761
- added trf to installation script and gitignore · 5c7ce7fb
  Ivan Vanat authored Jul 12, 2022
  
  5c7ce7fb
Mar 03, 2022
- Merge branch 'feature/custom-discovery-tool' of... · e70a5c63
  Pavel Jedlicka authored Mar 03, 2022
  
  Merge branch 'feature/custom-discovery-tool' of https://gitlab.fi.muni.cz/lexa/nested into feature/custom-discovery-tool
  e70a5c63
- WIP modules · 555c48a1
  Pavel Jedlicka authored Mar 03, 2022
  
  555c48a1
Nov 11, 2021
- cleanup after solo_ltr and trf; correct solo_ltr numbering · b69bdbc2
  Ivan Vanát authored Nov 11, 2021
  
  b69bdbc2
Feb 24, 2021
- Merge branch 'feature/custom-discovery-tool' of... · b3de6c8e
  Ivan Vanát authored Feb 24, 2021
  
  Merge branch 'feature/custom-discovery-tool' of https://gitlab.fi.muni.cz/lexa/nested into feature/custom-discovery-tool
  b3de6c8e
- fixed trf filtering · 102d1d7c
  Pavel Jedlicka authored Feb 24, 2021
  
  102d1d7c
Feb 03, 2021
- Merge branch 'feature/custom-discovery-tool' of... · ba6e9b25
  Ivan Vanát authored Feb 03, 2021
  
  Merge branch 'feature/custom-discovery-tool' of https://gitlab.fi.muni.cz/lexa/nested into feature/custom-discovery-tool
  ba6e9b25
- fixed trf; added output · 65e2f929
  Pavel Jedlicka authored Feb 03, 2021
  
  65e2f929