Loading README.md +10 −0 Original line number Original line Diff line number Diff line # nested # nested #### Introduction nested (now also called TE-greedy) is software to analyze nested LTR transposable elements in DNA sequences, such as reference genomes. It is made of two components: nested-generator for generating simulated sequences of nested retrotransposons, and nested-nester (now called TE-greedy-nester) that looks for nested, as well as non-nested and solo-LTR repeat sequences in the input. Unlike other similar software, TE-greedy-nester is structure-based by using de-novo retrotransposon identification software LTR Finder, relying on sequence information only secondarily. #### External tools #### External tools Program is using other external tools. Before usage make sure you have the following tools installed: Program is using other external tools. Before usage make sure you have the following tools installed: Loading Loading
README.md +10 −0 Original line number Original line Diff line number Diff line # nested # nested #### Introduction nested (now also called TE-greedy) is software to analyze nested LTR transposable elements in DNA sequences, such as reference genomes. It is made of two components: nested-generator for generating simulated sequences of nested retrotransposons, and nested-nester (now called TE-greedy-nester) that looks for nested, as well as non-nested and solo-LTR repeat sequences in the input. Unlike other similar software, TE-greedy-nester is structure-based by using de-novo retrotransposon identification software LTR Finder, relying on sequence information only secondarily. #### External tools #### External tools Program is using other external tools. Before usage make sure you have the following tools installed: Program is using other external tools. Before usage make sure you have the following tools installed: Loading
