Commit a7877141 authored by Jakub Horváth's avatar Jakub Horváth
Browse files

fixed installation

parent 9be6ac6b

TEster/README.md

0 → 100644
+6 −0
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Installation



chmod +x setup.sh

sudo ./setup.sh

TEster/setup.py

+9 −9
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@@ -7,15 +7,15 @@ setup( 
    author=TEster.__author__,

    packages=find_packages(),

    install_requires=[

        'bcbio-gff==0.6.4',

        'biopython==1.70',

        'click==6.7',

        'networkx==2.1',

        'PyYAML==3.12',

        'ruamel.yaml==0.16.10',

        'pyfastx==0.6.6',

        'numpy==1.17',

        'scipy==1.4.1'

        'bcbio-gff>=0.6.4',

        'biopython>=1.70',

        'click>=6.7',

        'networkx>=2.1',

        'PyYAML>=3.12',

        'ruamel.yaml>=0.16.10',

        'pyfastx>=0.6.6',

        'numpy>=1.17',

        'scipy>=1.4.1'

    ],

    entry_points={

        'console_scripts': [

setup.py

+14 −15
Original line number Diff line number Diff line 
from setuptools import setup, find_packages

import TEster



import nested



setup(

    name='TEster',

    version=TEster.__version__,

    description='nester testing tool',

    author=TEster.__author__,

    name='nested',

    version=nested.__version__,

    description='Nested description',

    author=nested.__author__,

    packages=find_packages(),

    install_requires=[

        'bcbio-gff>=0.6.4',

        'biopython>=1.70',

        'click>=6.7',

        'networkx>=2.1',

        'PyYAML>=3.12',

        'ruamel.yaml>=0.16.10',

        'pyfastx>=0.6.6',

        'numpy>=1.17',

        'scipy>=1.4.1'

        'bcbio-gff==0.6.4',

        'biopython==1.70',

        'click==6.7',

        'networkx==2.1',

        'PyYAML==3.12'

    ],

    entry_points={

        'console_scripts': [

            'TEster = TEster.toolchain.TEster:main'

            'nested-generator=nested.cli.generator:main',

            'nested-nester=nested.cli.nester:main'

        ]

    }

)