Loading README.md +6 −6 Original line number Diff line number Diff line Loading @@ -2,12 +2,12 @@ #### Introduction nested (now also called TE-greedy) is software to analyze nested LTR transposable elements in DNA sequences, such as reference genomes. It is made of two components: nested-generator for generating simulated sequences of nested retrotransposons, and nested-nester (now called TE-greedy-nester) that looks for nested, as well as non-nested and solo-LTR repeat sequences in the input. Unlike other similar software, TE-greedy-nester is structure-based by using de-novo retrotransposon identification software LTR Finder, relying on sequence information *nested* (now also called *TE-greedy*) is software to analyze nested LTR transposable elements in DNA sequences, such as reference genomes. It is made of two components: *nested-generator* for generating simulated sequences of nested retrotransposons, and *nested-nester* (now called *TE-greedy-nester*) that looks for nested, as well as non-nested and solo-LTR repeat sequences in the input. Unlike other similar software, *TE-greedy-nester* is structure-based by using de-novo retrotransposon identification software *LTR Finder*, relying on sequence information only secondarily. #### External tools Loading Loading
README.md +6 −6 Original line number Diff line number Diff line Loading @@ -2,12 +2,12 @@ #### Introduction nested (now also called TE-greedy) is software to analyze nested LTR transposable elements in DNA sequences, such as reference genomes. It is made of two components: nested-generator for generating simulated sequences of nested retrotransposons, and nested-nester (now called TE-greedy-nester) that looks for nested, as well as non-nested and solo-LTR repeat sequences in the input. Unlike other similar software, TE-greedy-nester is structure-based by using de-novo retrotransposon identification software LTR Finder, relying on sequence information *nested* (now also called *TE-greedy*) is software to analyze nested LTR transposable elements in DNA sequences, such as reference genomes. It is made of two components: *nested-generator* for generating simulated sequences of nested retrotransposons, and *nested-nester* (now called *TE-greedy-nester*) that looks for nested, as well as non-nested and solo-LTR repeat sequences in the input. Unlike other similar software, *TE-greedy-nester* is structure-based by using de-novo retrotransposon identification software *LTR Finder*, relying on sequence information only secondarily. #### External tools Loading