Commit 59cb1447 authored by Ivan Vanát's avatar Ivan Vanát
Browse files

generator more or less working

parent 75dd3641

nested/cli/generator.py

+2 −2
Original line number Original line Diff line number Diff line
@@ -35,7 +35,7 @@ def main(input_db, output_db, baselength, number_of_iterations, number_of_elemen 
        sketcher = Sketcher()

        sketcher = Sketcher()

        for element in generator.elements:

        for element in generator.elements:

            sketcher.create_gff(element, 'generated_data')

            sketcher.create_gff(element, 'generated_data')

            sketcher.sketch(element.id, 'generated_data')

            # sketcher.sketch(element.id, 'generated_data')

    end_time = datetime.now()

    end_time = datetime.now()

    print('Total time: {}'.format(end_time - start_time))

    print('Total time: {}'.format(end_time - start_time))

    #print('Number of errors: {}'.format(number_of_errors))

    #print('Number of errors: {}'.format(number_of_errors))

nested/core/te.py

+3 −3
Original line number Original line Diff line number Diff line
@@ -25,9 +25,9 @@ class TE(object): 
        score (float): evaluated score of TE

        score (float): evaluated score of TE

    """

    """





    def __init__(self, ppt=None, pbs=None, location=None,

    def __init__(self, ppt=[0, 0], pbs=[0, 0], location=[0, 0],

                 ltr_left_location=None, ltr_right_location=None,

                 ltr_left_location=[0, 0], ltr_right_location=[0, 0],

                 tsr_left=None, tsr_right=None, features={}, score=None):

                 tsr_left=[0, 0], tsr_right=[0, 0], features={}, score=None):

        self.ppt = ppt

        self.ppt = ppt

        self.pbs = pbs

        self.pbs = pbs

        self.location = location

        self.location = location