added dbs to repo, updated template config (471f3b54) · Commits · Matej Lexa / nested

.gitignore

+0 −1

+4 −4

Original line number	Original line	Diff line number	Diff line
	ltr:		ltr:
	path: '/home/xvanat/ltr_finder_repo/LTR_Finder/source/ltr_finder'		path: '/path/to/ltr_finder_repository/LTR_Finder/source/ltr_finder'
	prosite_path: &prosite_path /opt/nester/dbs/prosite		prosite_path: &prosite_path path/to/repository/dbs/prosite
	tRNAdb_path: &tRNAdb_path /home/xvanat/ltr_finder_repo/LTR_Finder/source/tRNA/Athal-tRNAs.fa		tRNAdb_path: &tRNAdb_path /path/to/ltr_finder_repository/LTR_Finder/source/tRNA/Athal-tRNAs.fa
	args:		args:
	l: 32		l: 32
	S: 3		S: 3
	@@ -24,7 +24,7 @@ gt:
	style: *style_path		style: *style_path

	blastx:		blastx:
	db_path: &db_path /opt/nester/dbs/gydb_proteins_db/gydb_proteins.fa		db_path: &db_path path/to/repository/dbs/gydb_arh_chdcr/gydb_arh_chdcr.fa
	args:		args:
	db: *db_path		db: *db_path
	outfmt: 5 #don't change, parsing format required!		outfmt: 5 #don't change, parsing format required!