Commit 31378861 authored by Marie Krátká's avatar Marie Krátká
Browse files

python3.10 compatible dependencies

parent 085222de

nested/entities/base_element.py

+1 −1
Original line number Original line Diff line number Diff line 
#!/usr/bin/env python3

#!/usr/bin/env python3

import math

import math

from typing import List, Optional, Dict, Union, NoReturn, Type

from typing import List, Optional, Dict, Union, NoReturn, Type

from collections import Iterable

from collections.abc import Iterable





from nested.utils import intervals

from nested.utils import intervals

setup.py

+7 −8
Original line number Original line Diff line number Diff line 
# this version is just copied from a different branch, probably won't work as is

from setuptools import setup, find_packages

from setuptools import setup, find_packages





import nested

import nested
@@ -9,18 +10,16 @@ setup( 
    author=nested.__author__,

    author=nested.__author__,

    packages=find_packages(),

    packages=find_packages(),

    install_requires=[

    install_requires=[

        'bcbio-gff==0.6.4',

        'bcbio-gff>=0.6.4',

        'biopython==1.70',

        'biopython>=1.70',

        'click==6.7',

        'click>=6.7',

        'networkx==2.1',

        'networkx>=2.7',

        'PyYAML==3.12',

        'PyYAML>=3.13,<6.0'

        'plotly==5.10.0'

    ],

    ],

    entry_points={

    entry_points={

        'console_scripts': [

        'console_scripts': [

            'nested-generator=nested.cli.generator:main',

            'nested-generator=nested.cli.generator:main',

            'nested-nester=nested.cli.nester:main',

            'nested-nester=nested.cli.nester:main'

            'nested-grapher=nested.nester_grapher.grapher:main'

        ]

        ]

    }

    }

)
 
)