Commit 10fe8282 authored by Pavel Jedlicka's avatar Pavel Jedlicka
Browse files

possible solo ltr fix

parent 4fed26f2

nested/core/solo_ltrs.py

+1 −1
Original line number Original line Diff line number Diff line
@@ -51,7 +51,7 @@ class SoloLtrs(object): 
                

                

                file.write(">ltr_" + str(num) + "\n") 

                file.write(">ltr_" + str(num) + "\n") 

                file.write(str(seq[tes[i - offset].ltr_left_location[0]:tes[i - offset].ltr_left_location[1] + 1]) + "\n")

                file.write(str(seq[tes[i - offset].ltr_left_location[0]:tes[i - offset].ltr_left_location[1] + 1]) + "\n")

                self.ltr_lengths["ltr_" + str(i)] = len(str(seq[tes[i - offset].ltr_left_location[0]:tes[i - offset].ltr_left_location[1] + 1]))

                self.ltr_lengths["ltr_" + str(num)] = len(str(seq[tes[i - offset].ltr_left_location[0]:tes[i - offset].ltr_left_location[1] + 1]))

                num += 1

                num += 1

    

    

    def run_blastn(self):

    def run_blastn(self):