Loading page2.Rmd +10 −0 Original line number Diff line number Diff line Loading @@ -2,6 +2,16 @@ title: Profile-HMM of coronavirus sequence --- ```bash apt get hmmer pip3 install pyfasta pyfasta split --header "fff/%(seqid)s.fasta" all.fasta hmmbuild MN908947.hmm MN908947.fasta ``` #(repeat for each sequence all call for all files in directory using bash command) # Another possible solution # large memory requirements Read fasta files with sequences: ```{r} Loading Loading
page2.Rmd +10 −0 Original line number Diff line number Diff line Loading @@ -2,6 +2,16 @@ title: Profile-HMM of coronavirus sequence --- ```bash apt get hmmer pip3 install pyfasta pyfasta split --header "fff/%(seqid)s.fasta" all.fasta hmmbuild MN908947.hmm MN908947.fasta ``` #(repeat for each sequence all call for all files in directory using bash command) # Another possible solution # large memory requirements Read fasta files with sequences: ```{r} Loading