Commit 33cba618 authored by Alexandra Stanová's avatar Alexandra Stanová
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Merge branch 'alex/page2' into 'master'

page2: add solution using hmmer

See merge request !6
parents 18314ca2 32effea2
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title: Profile-HMM of coronavirus sequence
---

```bash
apt get hmmer
pip3 install pyfasta
pyfasta split --header "fff/%(seqid)s.fasta" all.fasta
hmmbuild MN908947.hmm MN908947.fasta
```
#(repeat for each sequence all call for all files in directory using bash command)

# Another possible solution
# large memory requirements
Read fasta files with sequences:

```{r}