Package | Description |
---|---|
messif.objects.impl |
Implementation of basic data objects.
|
Modifier and Type | Class and Description |
---|---|
class |
ObjectFeatureSetNeedlemanWunsch
Needleman-Wunsch global sequence alignment algorithm.
|
class |
ObjectFeatureSetNeedlemanWunschWindowed
Needleman-Wunsch global sequence alignment computed by sliding windows.
|
class |
ObjectFeatureSetSmithWaterman
Smith-Waterman local sequence alignment algorithm.
|
class |
ObjectFeatureSetSmithWatermanWindowed
Smith-Waterman local sequence alignment computed by sliding windows.
|
Modifier and Type | Method and Description |
---|---|
static float |
ObjectFeatureSetNeedlemanWunsch.getDistanceByWindowing(SequenceMatchingCost cost,
ObjectFeatureOrderedSet.SlidingWindow wnd,
ObjectFeatureOrderedSet fs1,
ObjectFeatureOrderedSet fs2) |
static float |
ObjectFeatureSetSmithWaterman.getDistanceByWindowing(SequenceMatchingCost cost,
ObjectFeatureOrderedSet.SlidingWindow wnd,
ObjectFeatureOrderedSet fs1,
ObjectFeatureOrderedSet fs2) |