Bio-Volumentations

Image augmentation package for 3D/4D + channels volume data inspired by albumentations.

Main assumption is that the channel is first dimension and afterwards there are spatial dimensions and optionally time if image is 4D.

If input/image is 3D image without channels, then Compose automatically increase input by one dimension which represents one channel. It is recommended to use transformations inside Compose.

Project Info

GitLab repository : https://gitlab.fi.muni.cz/xsulan/volumentations-biomedicine/

License: MIT

Installation

You can use pip to install bio-volumentations :

pip install bio-volumentations


And import to your project as :

import bio_volumentations as biovol



Demo

You can use this Google Colaboratory notebook to

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