---
title: "IV105 Bionformatics seminar - Fall 2022"
date: 2022-08-30T18:45:11+02:00
type: post
categories:
- Teaching
tags:
- talk
- seminar
- interdisciplinarity
draft: false
thumbnail: https://gitlab.fi.muni.cz/bioinf/bioinf.pages.fi.muni.cz/-/raw/master/images/A319.png

---

The theme of this semester is “Bioinformatics for protein structure and function” and “Reproducibility and scalability in bioinformatics”. Please join us for the talks below, either in person (room A319, FI MU) or using the MSTeams platform. Contact lexa @ fi.muni.cz for additional information. To enter the online seminar, click on the title. If you are from outside the Masaryk University, you will be placed into a waiting room, please wait for the organizer to let you in.

#### 14.9. 4 PM
FI MU  
[Introduction to the seminar](https://is.muni.cz/go/online-vyuka-5cl9t2)  

#### 21.9. 4 PM
Invited Talk  
Marta Byrska Bishop  
NY Genome Center, New York, USA  
**[High coverage whole genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios](https://is.muni.cz/go/online-vyuka-hhsu1c)**  

#### 5.10. 4 PM
Invited Talk  
Sneha Goenka  
Department of Electrical Engineering, Stanford University, USA  
**[Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing](https://is.muni.cz/go/online-vyuka-i9so95)**  

#### 12.10. 4 PM
Invited Talk  
David Safranek  
Faculty of Informatics, Masaryk University, Brno, Czech Republic  
**[Reengineering Biological Systems through Boolean Networks](https://is.muni.cz/go/online-vyuka-5zbv5k)**  
[Slides](https://www.fi.muni.cz/~lexa/IV105.pdf)    

#### 19.10. 4 PM
Invited Talk  
Jaroslav Olha  
Faculty of Informatics, Masaryk University, Brno, Czech Republic  
**[Learned Indexing in Proteins: Substituting Complex Distance Calculations with Embedding and Clustering Techniques](https://is.muni.cz/go/online-vyuka-3hpwo9)**  

#### 26.10. 4 PM
Invited Talk  
Bohdan Tyshchenko  
Kyiv National University, IMBiG (currently internship at University of Southern California)  
**[Rigorous benchmarking of methods for SARS-CoV-2 lineage detection in wastewater](https://is.muni.cz/go/online-vyuka-otfdt6)**  
![Support Ukraine](https://icons.iconarchive.com/icons/custom-icon-design/all-country-flag/24/Ukraine-Flag-icon.png)  
[Support Ukraine](https://www.supportukraine.cz/)  

#### 2.11. 4 PM
Invited Talk  
Juami H.M. van Gils  
Vrije Universiteit, Amsterdam, The Netherlands  
**[Protein aggregation in brain disease](https://is.muni.cz/go/online-vyuka-rqaioo)**  

#### 9.11. 4 PM
FI MU  
**Student presentations**  
Patrik Began  
[Martin et al. (2005)](https://academic.oup.com/bioinformatics/article/21/22/4116/194500). Using information theory to search for co-evolving residues in proteins.  

#### 16.11. 4 PM
FI MU  
**Student presentations**  
Veronika Petrikova  
[Gupta and Mukherjee (2022)](https://onlinelibrary.wiley.com/doi/10.1002/prot.26345). Capturing surface  complementarity in proteins using unsupervised learning and robust curvature measure.  

#### 23.11. 4 PM
Invited Talk  
Dmytro Horyslavets  
Kyiv Academic University/ETH Zurich/IMBiG Kyiv, Ukraine  
**[Sequence-read extraction from counting de Bruijn graphs](https://is.muni.cz/go/online-vyuka-rsfs1n)**  

#### 30.11. 4 PM
FI MU  
**Student presentations**  
Tomas Pavlik  
[Strodthoff et al. (2020)](https://doi.org/10.1093/bioinformatics/btaa003). UDSMProt: universal deep sequence models for protein classification.  

#### 7.12. 4 PM
Invited Talk or Student Presentation  
TBD  
Institution  
**[TBD](https://is.muni.cz/go/online-vyuka-4gfvp1)**  

