---
title: "IV106 Bionformatics seminar"
date: 2022-02-07T16:00:00+02:00
type: post
categories:
- Teaching
tags:
- talk
- seminar
- interdisciplinarity
draft: false
thumbnail: https://gitlab.fi.muni.cz/bioinf/bioinf.pages.fi.muni.cz/-/raw/master/images/A319.png

---

The theme of this semester is deep learning and integrative data analysis. Please join us for the talks below, either in person or using the MSTeams platform. Contact cechova @ fi.muni.cz or lexa @ fi.muni.cz for additional information. 

#### 16.2. 4 PM
FI MU  
Introduction to the seminar  
**[Intro to the Bioinformatics Student Seminar Series (Students Only)](https://is.muni.cz/go/online-vyuka-l6bo3g)**

#### 23.2. 4 PM
Invited Talk  
Dr. Sebastian Cristian Treitli  
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Czechia  
**[Write twice, run once. How code implementation can ruin your results.](https://is.muni.cz/go/online-vyuka-dsfbr7)**

#### 2.3. 4 PM
Dr. Janka Puterova and Jan Kotrs  
Invited Talk  
DNAnexus, Czechia  
**[Powering the Genomics Revolution - In the Cloud](https://is.muni.cz/go/online-vyuka-89lt8q)**

#### 9.3. 4 PM
Invited Talk  
Dr. Eva Budinska  
Integrative bioinformatics and biostatistics, RECETOX, Czechia  
**[Microbiome taxonomy assignment - when 16S rRNA outperforms WMGS metagenomics](https://is.muni.cz/go/online-vyuka-y7807x)**

#### 16.3. 4 PM
Invited Talk  
Dr. Vojtěch Bystrý  
Bioinformatics Core Facility, CEITEC MU, Czechia  
**[NGS applications in molecular medicine](https://is.muni.cz/go/online-vyuka-lc8z0c)**

#### 23.3. 4 PM
Invited Talk  
Dr. Panagiotis Alexiou  
Centre for Molecular Medicine, CEITEC MU, Czechia  
**[Using Convolutional Neural Networks and Transformers to model Ago mediated small RNA targeting](https://is.muni.cz/go/online-vyuka-24vp8t)**

#### 30.3. 4 PM
Invited Talk  
Dr. Molly Hall  
Department of Veterinary and Biomedical Sciences, Penn State, USA  
**[Modeling and analyzing complex relationships in biological big data](https://is.muni.cz/go/online-vyuka-ynswgw)**

#### 6.4. 4 PM
FI MU Journal Club  
Michaela Hanajikova: Deng et al. (2022). Rapid and accurate identification of ribosomal RNA sequences via deep learning.  
Samuel Šuľan: Guzetta et al. (2010). A machine learning pipeline for quantitative phenotype prediction from genotype data.  
**[Student presentations (Students Only)](https://is.muni.cz/go/online-vyuka-gpybpi)**

#### 13.4. 4 PM
FI MU Journal Club  
**[Student presentations](https://is.muni.cz/go/online-vyuka-7362nw)**

#### 20.4. 4 PM
No meeting this week.  
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#### 27.4. 4 PM
FI MU Journal Club.  
Marie Kratka: Amato et al. (2020). CORENup: a combination of convolutional and recurrent deep neural networks for nucleosome positioning identification.  
David Cechak: Rao et al. 2021. MSA Transformer.  
**[Student presentations (Students Only)](https://is.muni.cz/go/online-vyuka-2w9f1p)**

#### 4.5. 4 PM
FI MU Journal Club.  
Vlastimil Martinek: Ji et al. (2021). DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome.  
**[Student presentations (Students Only)](https://is.muni.cz/go/online-vyuka-h2vjvw)**

#### 11.5. 4 PM
Invited Talk (moved from 20.4.)
Dr. Emmanuelle Lerat  
Universite Claude Bernard Lyon 1, CNRS, France  
**[Transposable element annotation and analysis in -omic data](https://is.muni.cz/go/online-vyuka-i9b9ns)**
